Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0424 ATGGCCGCCACCACCAACGCCACAGCCCCGCCGCGACAGCTTTCCCAGAAGGAAGCCGACATCCAGATGATGTTGGCCGCCGACGTCCACCTTGGCACCAAAAACTGTGACTTCCAAATGGAACGTTACATCTTCAAGCGCCGCAACGATGGGATTTACATTATTAACCTTGGGAAGACGTGGGAGAAGCTTCAGCTAGCAGCTAGGGTTATTGTTGCAATTGAGAACCCTCAGGATATCATTGTTCAATCCGCGAGGCCTTACGGTCAAAGAGCGGTTCTGAAGTTTGCACAGTACACCGGTGCTCATGCTATTGCTGGAAGGCACACCCCTGGTACCTTCACAAATCAGCTTCAGACTTCCTTCAGCGAGCCTCGTCTCCTTATCCTCACCGATCCAAGAACTGATCACCAGCCTATTAAGGAAGCTGCTCTTGGGAACATTCCCACCATTGCTTTCTGCGACACTGATTCGCCTATGAGGTATGTGGACATTGGAATTCCTGCCAATAACAAGGGCAAACACAGCATTGGTTGTCTCTTCTGGCTCCTTGCAAGGATGGTGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGGTGGATTTGTTCTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGGAGGAAGCTCCAGCAGGTGATTATGCCATCACAGATTTCAATGCAGGAAATATTGCTGCTGATGGCCAGTGGCCTGGTGCAATTGATCAATCATGGAGTGATGCAGTTCCACAACCTATTCCAGCAGTACCTGGTGTCAACTGGGGAGCACCTGCAGAAGCACCTGCTGCAGCAGCAGTTGCAGGAGGAGATTGGGGTGAAGCTGTTCCAGCACCACAACAAATTCCTCTTCCTCCCTCCGGAGTTGACTCTGTTCAACCAACTGGCTGGGATTAA 939 0.5112 MAATTNATAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAGDYAITDFNAGNIAADGQWPGAIDQSWSDAVPQPIPAVPGVNWGAPAEAPAAAAVAGGDWGEAVPAPQQIPLPPSGVDSVQPTGWD 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0424 312 CDD RPS2 24 190 IPR001865 GO:0003735|GO:0005840|GO:0006412
Aed2g0424 312 Pfam Ribosomal protein S2 24 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Aed2g0424 312 Pfam Ribosomal protein S2 123 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Aed2g0424 312 ProSitePatterns Ribosomal protein S2 signature 2. 125 149 IPR018130 GO:0003735|GO:0005840|GO:0006412
Aed2g0424 312 MobiDBLite consensus disorder prediction 279 312 - -
Aed2g0424 312 PRINTS Ribosomal protein S2 signature 142 153 IPR001865 GO:0003735|GO:0005840|GO:0006412
Aed2g0424 312 PRINTS Ribosomal protein S2 signature 163 177 IPR001865 GO:0003735|GO:0005840|GO:0006412
Aed2g0424 312 PRINTS Ribosomal protein S2 signature 21 39 IPR001865 GO:0003735|GO:0005840|GO:0006412
Aed2g0424 312 PRINTS Ribosomal protein S2 signature 100 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Aed2g0424 312 PRINTS Ribosomal protein S2 signature 125 142 IPR001865 GO:0003735|GO:0005840|GO:0006412
Aed2g0424 312 PRINTS Ribosomal protein S2 signature 51 60 IPR001865 GO:0003735|GO:0005840|GO:0006412
Aed2g0424 312 Gene3D - 20 226 - -
Aed2g0424 312 PANTHER 40S RIBOSOMAL PROTEIN SA 6 284 - -
Aed2g0424 312 PANTHER 40S RIBOSOMAL PROTEIN SA 6 284 IPR005707 GO:0003735|GO:0006412|GO:0015935
Aed2g0424 312 SUPERFAMILY Ribosomal protein S2 16 206 IPR023591 -
Aed2g0424 312 Hamap 40S ribosomal protein SA [rps-0]. 8 256 IPR027498 GO:0003735|GO:0006412|GO:0015935
Aed2g0424 312 TIGRFAM uS2_euk_arch: ribosomal protein uS2 16 212 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0424 Aed-Chr2 2917221 2919298 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0424 1 284 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 75.958 2.12e-152 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0424 K02998 - gmx:100805318 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0424 2 2917221 2919298 Aed2g0424 2 2917221 2919298 ECH