LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed2g0406	ATGGCGACCAAAATTTCACCTATGGAGTTGCACGAAATCACCACCGAATCCGAAGAATCCGACCTCGATTCCGAGTGTGACGATTCGGAGGAAGACCCCGATTTCGACGTGCTCGAAGAAACTCATAGCAAGTTCTTCAACCTCTCACTTAAGCACAAGGCAAAAGCGCAGATTTTAAATGGAGGGGAGAAGAAGTACCCGCCTTCAAGCTTTGTGTTGAATTGTAAAGGTGATGCTTGCACCGGTGATGTTGTTTTGTTTGAGCAAAATGTCTATGAAATGTTCAACATAGCATCCAGGAGTGCAAGTGGTCCACCTTGTGGCAAAAGGGTTGTAGCCGGCCGCATAGTGAAAGAAAGTTATGGTGCAGCTAAACAACAGCATACATTTACGATTGAAGTACTCTGGAGCAGTGGAGAAAAGCCTCTCCCTCCCCTTTACCCCCTACTGATTAAGGGTCGAAACCTTTATAGGTTAAAGACTTTGAGACAGAAATGGGAGGATGAAGCAAAAAGGCAGAAAATATTGATGGAAAAACACTCAAGGGGATCTCTTGCTAGGGAAGATAGAGTAGCAAGGATGCAAGAAAAGGAGAAGAGGAAAAAAATTAGGGAAAACAGGGTCTCCAAAAAGGATTCAGCAAGGAACCAATGTCAGTCAAATTCACACATTACAAGGTCACAATATCAACCTCAAGAAACAAATGTACCCATTAATCCAGAAAAGCCAGAATTTCCATCTCGAAATTCAGGTTTATCTGCCAACATAAGGAAAGAAACATCCTCTATTGTAAATAAACCAGCAGCCAGAACCGGACAATGTGTTGATTCTAAAACTTTAGGAAGAACATCATTTACTAATCCGAATATGCATAATCAGCAACCTTGGAACCACACAGGTAATATTGGTCATATGAGGGGAGCTGATCTTAGTGCATACTACATTTATGCTGACCCCCATTTCAGAGAAAAACCAACTATTATTCAGAAATACCACCACCCTTTCATGGCTGAGACAACTGGATTTACAGCGGGGACTCATCATAGAATGCCTTTGGCAAATGCAAACCACTCTCAACTGGTGATGCCAACTAGAGAAAGCTATAAGCAAAACCAGGTGTGTAGACATTATGCCCGTGGAAGGTGCTATTTTGGGGACAACTGCAAATTTTTGCATGATTTGAGAGACAAAAGGGAATGGGTGAATTAA	1209	0.4218	MATKISPMELHEITTESEESDLDSECDDSEEDPDFDVLEETHSKFFNLSLKHKAKAQILNGGEKKYPPSSFVLNCKGDACTGDVVLFEQNVYEMFNIASRSASGPPCGKRVVAGRIVKESYGAAKQQHTFTIEVLWSSGEKPLPPLYPLLIKGRNLYRLKTLRQKWEDEAKRQKILMEKHSRGSLAREDRVARMQEKEKRKKIRENRVSKKDSARNQCQSNSHITRSQYQPQETNVPINPEKPEFPSRNSGLSANIRKETSSIVNKPAARTGQCVDSKTLGRTSFTNPNMHNQQPWNHTGNIGHMRGADLSAYYIYADPHFREKPTIIQKYHHPFMAETTGFTAGTHHRMPLANANHSQLVMPTRESYKQNQVCRHYARGRCYFGDNCKFLHDLRDKREWVN	402

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed2g0406	402	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62-LIKE	7	57	-	-
	Aed2g0406	402	MobiDBLite	consensus disorder prediction	177	297	-	-
	Aed2g0406	402	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI	57	396	IPR045124	GO:0003723\|GO:0045892
	Aed2g0406	402	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62-LIKE	57	396	-	-
	Aed2g0406	402	SMART	c3hfinal6	369	394	IPR000571	GO:0046872
	Aed2g0406	402	Gene3D	-	360	401	-	-
	Aed2g0406	402	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI	7	57	IPR045124	GO:0003723\|GO:0045892
	Aed2g0406	402	Pfam	CCCH-type zinc finger	373	393	IPR041367	-
	Aed2g0406	402	MobiDBLite	consensus disorder prediction	177	212	-	-
	Aed2g0406	402	MobiDBLite	consensus disorder prediction	1	32	-	-
	Aed2g0406	402	SUPERFAMILY	CCCH zinc finger	369	393	IPR036855	GO:0046872
	Aed2g0406	402	ProSiteProfiles	Zinc finger C3H1-type profile.	368	395	IPR000571	GO:0046872
	Aed2g0406	402	MobiDBLite	consensus disorder prediction	213	237	-	-
	Aed2g0406	402	MobiDBLite	consensus disorder prediction	18	32	-	-
	Aed2g0406	402	MobiDBLite	consensus disorder prediction	276	297	-	-
	Aed2g0406	402	MobiDBLite	consensus disorder prediction	246	268	-	-

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Aed2g0406		zf-CCCH_4	7.1e-09	CL0537

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed2g0406	-		-	gmx:100815642	568.926

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed2g0406	2	2805695	2808693	Aed2g0406	2	2805695	2808693	ECH