Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0401 ATGCAGAATCACAGGCTGAAGCAGCAGCAACAACAGCAACAACAACAACAACAACAACAACAAGCTCTGATGCAGCAGGCTCTTCTCCAACAACAGTCTCTCTACCACCCTGGCCTCCTTGCTCCTCCTCAGATTGAGCCAATTCCAAGTGGAAATCTGCCTCCGGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTCGGGAACATCCATACACAGGTAACTGAGCCACTTTTGCAAGAAGTTTTTGCGGGTACTGGCCCAGTTGAAGGTTGTAAGCTTATCAGAAAGGAGAAGTCATCCTATGGATTCATTCATTACTTTGATCGCAGATCTGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAATTGGGCATATGCTAGTGGTCAGAGAGAGGATACGTCAGGTCATTTCAACATATTTGTTGGTGATCTAAGTCCTGAGGTTACTGATGCTACGCTGTTTGCATGCTTTTCTGTCTATCCCAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAATCAACAGGTATTTTTAATTCAAGATGGAAAATTGTCTTATAGACTTTGTAGAATTACCTCTTATGGTAAGTGGCTTGGAAGTAGACAAATACGTTGTAACTGGGCAACGAAAGGTGCTGGTGGTAATGAAGAGAAGCAAAGCTCAGATGCAAAAAGTGTGGTGGAACTAACAAATGGCTCATCTGAAGATGGTAAAGAGACATCTAGCAGTGATGCTCCTGAGAACAATCCTCAGTATACTACGGTTTATGTGGGTAACCTTGCTTCAGAGGTAACTCAACTAGATCTCCATCGTCACTTCCATTCTCTTGGGGCTGGAGTGATAGAGGAGGTTCGTGTCCAGCGTGATAAAGGGTTTGGTTTCGTGAGGTACAGTTCTCACGCTGAAGCAGCTCTGGCTATTCAGATGGGGAATGCCCAATCTCTTCTCTGTGGAAAACAGATGAAGTGCTCTTGGGGTAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCCCTTCCCCCACCTGCTGCTGCATCTCTTCCTGGCCTGTCTGCAACTGACCTTTTGGCGTATGAGCGACAGCTAGCAATGAGCAAGATGGGCGGCGTCCATGCCTTGATGCATCCTCAAGGGCAACATCCTCTTAAACAAGCAGCAGCTATTGGAGCTAGCCAGGCAATATATGATGGTGGGTTCCAGAATGTAGCAGCTGCTCAGCAAATGATGTACTACCAGTAG 1314 0.4627 MQNHRLKQQQQQQQQQQQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFAGTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQVFLIQDGKLSYRLCRITSYGKWLGSRQIRCNWATKGAGGNEEKQSSDAKSVVELTNGSSEDGKETSSSDAPENNPQYTTVYVGNLASEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSSHAEAALAIQMGNAQSLLCGKQMKCSWGSKPTPPGTASNPLPPPAAASLPGLSATDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAAAIGASQAIYDGGFQNVAAAQQMMYYQ 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0401 437 MobiDBLite consensus disorder prediction 238 277 - -
Aed2g0401 437 MobiDBLite consensus disorder prediction 235 277 - -
Aed2g0401 437 CDD RRM1_TIA1_like 65 135 - -
Aed2g0401 437 Coils Coil 1 26 - -
Aed2g0401 437 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 12 435 - -
Aed2g0401 437 SUPERFAMILY RNA-binding domain, RBD 61 235 IPR035979 GO:0003676
Aed2g0401 437 SMART rrm1_1 149 231 IPR000504 GO:0003723
Aed2g0401 437 SMART rrm1_1 64 133 IPR000504 GO:0003723
Aed2g0401 437 SMART rrm1_1 279 349 IPR000504 GO:0003723
Aed2g0401 437 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 12 435 - -
Aed2g0401 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 337 IPR000504 GO:0003723
Aed2g0401 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 150 199 IPR000504 GO:0003723
Aed2g0401 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 131 IPR000504 GO:0003723
Aed2g0401 437 CDD RRM2_PUB1 149 232 - -
Aed2g0401 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 148 235 IPR000504 GO:0003723
Aed2g0401 437 SUPERFAMILY RNA-binding domain, RBD 268 360 IPR035979 GO:0003676
Aed2g0401 437 CDD RRM3_TIA1_like 278 353 - -
Aed2g0401 437 SUPERFAMILY beta-sandwich domain of Sec23/24 8 55 - -
Aed2g0401 437 Gene3D - 249 357 IPR012677 -
Aed2g0401 437 Gene3D - 145 248 IPR012677 -
Aed2g0401 437 Gene3D - 1 144 IPR012677 -
Aed2g0401 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 137 IPR000504 GO:0003723
Aed2g0401 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 278 353 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0401 Aed-Chr2 2762568 2767877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0401 64 360 Eukaryotic Initiation Factors Gene Family AT3G16380 26.948 2.43e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0401 K13201 - gmx:100781227 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0401 2 2762568 2767877 Aed2g0401 2 2762568 2767877 ECH