Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0367 ATGGGAAGAAGCCCTTGTTGTTCTAAGGAAGGGTTGAACAAAGGAGCATGGACAGCTCTTGAAGATAAAATTCTCACAGAATACATTAACATTCATGGCGAAGGAAAATGGAGACACCTGCCCAAAAGAGCAGGTCTTAAGAGATGTGGGAAAAGTTGCAGGCTGAGATGGTTGAATTATCTAAGACCTGGCATTAAAAGAGGCAACATTACTAATGATGAAGAGGAGCTTATAATCAGGCTTCACAATCTCCTTGGAAACAGGTGGTCCTTGATTGCTGGACGGCTTCCAGGACGAACAGACAATGAAATCAAGAATTATTGGAACACCAACATTGGAAGGAAACTTCAAAGTGGTGGTAGTACTGCACCAAGCACAGTTCAACAAGATAATGAAAACGTTAAAAACCAAGAGGAGCACTATGACAAGGGTTCTTGTCTTGTTCAGACTAAAGCAACAAGGTGGACTAAGGTCACAGTCACTAATGAAGTTAGTCAACAAAATGATGAAGGGAATATTATTATTAAGAGCAATGTTGTTGGTGATCATTACAAAAAGAAGGGGTTTTCAGTACTGTCTCCATCTTCAGAGGGTAACATTAATAATGATCCAGTGTTGGATTTCATGGCAGATCTTGAGATGGATGGAAACTTCTTCTCGGAGCTTCTTAAGATGGATTTGCCCGAATCATCATCTTGTCAACAAGAAAATAAGATATTATTGGAAGATAATGGTAACCCTAGCACGGTTTTGTCTCCAAAATCATCCACTGATACCACCCACTTCCCTTGGGGTGATTCATTGTATGATACAAATTTTGATTTTCTACCAGTCACAGCTTTTATGGAGTCTGGATTTGATTGGCTCTGA 870 0.3989 MGRSPCCSKEGLNKGAWTALEDKILTEYINIHGEGKWRHLPKRAGLKRCGKSCRLRWLNYLRPGIKRGNITNDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGRKLQSGGSTAPSTVQQDNENVKNQEEHYDKGSCLVQTKATRWTKVTVTNEVSQQNDEGNIIIKSNVVGDHYKKKGFSVLSPSSEGNINNDPVLDFMADLEMDGNFFSELLKMDLPESSSCQQENKILLEDNGNPSTVLSPKSSTDTTHFPWGDSLYDTNFDFLPVTAFMESGFDWL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0367 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aed2g0367 289 SMART sant 13 63 IPR001005 -
Aed2g0367 289 SMART sant 66 114 IPR001005 -
Aed2g0367 289 CDD SANT 16 61 IPR001005 -
Aed2g0367 289 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Aed2g0367 289 MobiDBLite consensus disorder prediction 117 132 - -
Aed2g0367 289 Gene3D - 70 144 - -
Aed2g0367 289 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 228 - -
Aed2g0367 289 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed2g0367 289 CDD SANT 71 112 IPR001005 -
Aed2g0367 289 MobiDBLite consensus disorder prediction 117 140 - -
Aed2g0367 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aed2g0367 289 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed2g0367 289 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Aed2g0367 289 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed2g0367 289 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 228 - -
Aed2g0367 289 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0367 Aed-Chr2 2515236 2516623 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0367 1 132 MYB Transcription Factor Family AT2G16720 71.212 8.84e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed2g0367 Myb_DNA-binding 2.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0367 K09422 - gmx:100809225 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0367 2 2515236 2516623 Aed2g0367 2 2515236 2516623 ECH
Aed2g0367 2 2515236 2516623 Aed6g1050 6 14924936 14926967 ECH