Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0358 ATGGAACTCTACCCTTGGTTTCTGATAATTGGAACACTGGTAATTTCTTTCACATTTTTCACTGTGACCATGCTTGGATGGTGCATTAATACGAATCACATACGATCCAATATTCCTCCAACAACAGTGTTATCTTTTGGTGACAAGTTGTCTCCTTGCATGAGTTTAGAGTCTCATTCAATTACTTTCCAATACAAGGCTGCAGAAGAAGGCACAAACCATAGTACTGAATGTGTTATCTGCTTGACAAGTTTTGAAGAAGAGGAAAGTGTAAGAAAGCTTCACACTTGCAAGCATGTCTTCCACACCTCTTGCATTGACAAGTGGCTTGGCTCTCATTCTGGATGTCCACTGTGCCGCACTAAGATTGACAGAGTGAATTCCCCAAATAGTAGAGTGGCTTTGTAA 408 0.4069 MELYPWFLIIGTLVISFTFFTVTMLGWCINTNHIRSNIPPTTVLSFGDKLSPCMSLESHSITFQYKAAEEGTNHSTECVICLTSFEEEESVRKLHTCKHVFHTSCIDKWLGSHSGCPLCRTKIDRVNSPNSRVAL 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0358 135 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 49 135 - -
Aed2g0358 135 SMART ring_2 78 119 IPR001841 -
Aed2g0358 135 Pfam Ring finger domain 77 120 IPR001841 -
Aed2g0358 135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 129 IPR013083 -
Aed2g0358 135 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 49 135 IPR044675 -
Aed2g0358 135 SUPERFAMILY RING/U-box 71 126 - -
Aed2g0358 135 ProSiteProfiles Zinc finger RING-type profile. 78 120 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0358 Aed-Chr2 2443058 2443465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0358 47 134 C3H Transcription Factor Family AT5G17600 46.067 1.52e-18 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0358 - - gmx:102661636 236.498