Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0352 ATGAAGAACTTTTCTGAGAAAGGCTCTGGCTCTACCCATTTAACATCTCCTTATGCTCTTGGATGCTCATCATGGGGGACTTCCTCTGAATCTGATGTTCAACAATCATCCATGTCCAAAAATTTGAGCTTGAAAATGAGTGTTCTGCCGCAACATTGCCATAAGACAAAGCCATCGAGTTTTCAATATCACGACCGAGATTCATCTTCAACTCAATCAACCGGTCAGTCTTATCCAGAAGTTGGTTCAGCACAATCAGCTGCTACTGGAGTACTCTGGAATCTTTATGGTCAAGTTTCAGTGCAGTGTAGCAATTCTTCTGCTTGTTCAACACTTAACACAACTGGGGGAAAGAATGTGGAAGGTGTCATGAGGTCATCTTTGGGGACTCAGGATTTTCCCTTCCATCCTTCTCAACTGTATTACAACCAATCACTTGCTCATACTGCATTCCACCTTGCTGAGCCATGCTTTAGTGGCCTACTACCTGCTCCATATGGGCCACAGCCTAATATCCATCATGCTCAGCTAATGGGAATGACTCCTGCTCGAATTCCTCTGCTGCTTGATCTTAGTGATGAGCCCGTGTATCCATATCTTCATGAGTCCCGCCATCAACATGCAATGAAGAGAGCTAGAGGTTCCGGTGGACGCTTTTTGAATTCCAAAAAGCTCCAAGAGACAAAGCTCACTTCAGCAAAAAATGGCTTAGATGCTTCCAGCCTTACCCAGTTGAATCTGAGGGGAAATATGTCAGAATCTAAGTTTCATCCAGTAGATGGTGCCTCTACAACCACTTGTTCTGATGTCACTAGTGCATCTAATAGTGATGATGTCTTCCAGCAACATGAGTCAAACTTTAGGTTATGTGGTTACCCTTCTCATATTGGAAGGAACATGCAGGGTTACTCGGCTGATGTTGGTGGTGGTGGTAGTGGTGGACGAAATCAACGTCATCTATCAATCCTTATGTGA 975 0.441 MKNFSEKGSGSTHLTSPYALGCSSWGTSSESDVQQSSMSKNLSLKMSVLPQHCHKTKPSSFQYHDRDSSSTQSTGQSYPEVGSAQSAATGVLWNLYGQVSVQCSNSSACSTLNTTGGKNVEGVMRSSLGTQDFPFHPSQLYYNQSLAHTAFHLAEPCFSGLLPAPYGPQPNIHHAQLMGMTPARIPLLLDLSDEPVYPYLHESRHQHAMKRARGSGGRFLNSKKLQETKLTSAKNGLDASSLTQLNLRGNMSESKFHPVDGASTTTCSDVTSASNSDDVFQQHESNFRLCGYPSHIGRNMQGYSADVGGGGSGGRNQRHLSILM 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0352 324 Gene3D - 190 223 - -
Aed2g0352 324 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 198 219 IPR001289 GO:0003700|GO:0006355
Aed2g0352 324 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 198 288 IPR001289 GO:0003700|GO:0006355
Aed2g0352 324 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 19 197 IPR001289 GO:0003700|GO:0006355
Aed2g0352 324 SMART cbf3 161 222 IPR001289 GO:0003700|GO:0006355
Aed2g0352 324 ProSiteProfiles NF-YA/HAP2 family profile. 198 222 IPR001289 GO:0003700|GO:0006355
Aed2g0352 324 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 198 288 - -
Aed2g0352 324 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 19 197 - -
Aed2g0352 324 MobiDBLite consensus disorder prediction 56 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0352 Aed-Chr2 2375447 2380383 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0352 1 311 CCAAT-HAP2 Transcription Factor Family AT1G72830 37.003 4.06e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Aed2g0352 CBFB_NFYA 3.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0352 K08064 - gmx:100500765 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0352 2 2375447 2380383 Aed2g0352 2 2375447 2380383 ECH
Aed1g1332 1 12439627 12441154 Aed2g0352 2 2375447 2380383 PCT