Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0351 ATGGACTCGCGCACGTATAATCCTCGCACCGTCGAAGAGGTTTTTAGGGATTTCAAGGGCCGAAGAGCTGGTCTCATCAAAGCCCTAACCACCGATGTTGAAGATTTCTACAATCAATGTGATCCGGAGAAGGAGAATTTGTGCTTGTATGGCTTTCCCAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTACCACCAGAGCTTCCTGAACCTGTGCTGGGCATTAACTTTGCAAGGGATGGCATGCAAGAAAAAGACTGGCTATCTTTAGTTGCTGTCCATAGTGATGCATGGTTACTTGCTATTGCATTCTATTTTGGAGCCAGATTTGGGTTTGATAAAGCTGACAGGAAACGGCTTTTCAACATGATCAATGAACTGCCAACGATATTTGAAGTCGTTACTGGTGCAGCAAAGAAGCAAGTTAAGGAGAAATCTTCAGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAAGGCACAGCGAGCTCCAGAATCTCAGGTTAGACAGTCAAAGCCATTGCACCCAAAAGACGAGGATGAAGAACTGGATGACCAAGATGAAGATGAACATGGAGAGACCTTGTGTGGGGCTTGTGGTGAGCATTATGGCACTGATGAATTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCATGGTAAATGTGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAACAATACAAGTGCCCATCATGCAGTAACAAGAGAGCTCGCCCCTGA 762 0.458 MDSRTYNPRTVEEVFRDFKGRRAGLIKALTTDVEDFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINELPTIFEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKAQRAPESQVRQSKPLHPKDEDEELDDQDEDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0351 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Aed2g0351 253 Pfam PHD-finger 200 249 IPR019787 -
Aed2g0351 253 PANTHER CPG BINDING PROTEIN 5 253 IPR045104 GO:0006355|GO:0042393
Aed2g0351 253 MobiDBLite consensus disorder prediction 149 172 - -
Aed2g0351 253 MobiDBLite consensus disorder prediction 144 191 - -
Aed2g0351 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Aed2g0351 253 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 5 253 - -
Aed2g0351 253 SMART PHD_3 199 247 IPR001965 -
Aed2g0351 253 CDD PHD_AL_plant 199 249 IPR044104 -
Aed2g0351 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Aed2g0351 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Aed2g0351 253 Pfam Alfin 10 138 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0351 Aed-Chr2 2369711 2373500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0351 6 252 Alfin-like Transcription Factor Family AT3G42790 75.709 3.40e-125 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Aed2g0351 Alfin 3.1e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0351 - - gmx:100170700 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0351 2 2369711 2373500 Aed1g1333 1 12441718 12445305 ECH
Aed2g0351 2 2369711 2373500 Aed2g0351 2 2369711 2373500 ECH
Aed1g1333 1 12441718 12445305 Aed2g0351 2 2369711 2373500 PCT