Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0336 ATGGGGAATCAGAAGCAGAAGTGGACGCAGGACGAGGAAGACGCACTCATCGCCGGAGTTGAAAAGCACGGCCCCGGAAAGTGGAAGAACATTCTCAAGGATCCCCAATTTGCCCCTTTCCTCACTTCCCGTTCCAACATCGACCTCAAGGATAAATGGCGCAATTTGAGCGTCAGCAACGGTGCTCAAGGCTCCAAAGAAAAATCTAGGGTTCCTAAGCCCAAAGCTCTCCCTGCTCCTCCTACCCCTACTGCCACCACCACCACCACCGCCTCCGCCACTCCTCTAATCGCTGCTCCTGCTCCTCAAAACGCACCGTCTGATGTTGCTGATCCTGACGCCTCTCAGAATGACCAAGATGTCAAAAACCCTCCGAGGGCGTTAAGTACAAGGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAGGTACAAAACTGTTACAGGGTGAAAAAGGAAGCCTCCCCGGGGACAAAATTACCTTCACCAAAACCAAAGGATGTCCGACCACCACAACTACAACGTCAATCCCCAGCTTCTGTCTTTACCAATGATACAATAAAGGAAGCTGCGGAAACTGCAGCCTACAGAGTTGCTGATGCTGAAAGTAAATCATATCTGGCTGCAGAAGCAGTAAAGGAGGCAGAAAAAATATCATCGATGGTTGAACATAGTGATTCAATGTTACAGCTAGCAAAAGATATATATGAACAATGTTCCCGTGGTGAAATTATCCTCTTGGCTTAA 747 0.4833 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGAQGSKEKSRVPKPKALPAPPTPTATTTTTASATPLIAAPAPQNAPSDVADPDASQNDQDVKNPPRALSTRLRRLVSQGKLEKVQNCYRVKKEASPGTKLPSPKPKDVRPPQLQRQSPASVFTNDTIKEAAETAAYRVADAESKSYLAAEAVKEAEKISSMVEHSDSMLQLAKDIYEQCSRGEIILLA 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0336 248 MobiDBLite consensus disorder prediction 54 181 - -
Aed2g0336 248 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Aed2g0336 248 MobiDBLite consensus disorder prediction 82 97 - -
Aed2g0336 248 SMART sant 4 59 IPR001005 -
Aed2g0336 248 PANTHER SINGLE MYB HISTONE 4 1 108 IPR044597 GO:0003691
Aed2g0336 248 PANTHER SINGLE MYB HISTONE 4 125 247 IPR044597 GO:0003691
Aed2g0336 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Aed2g0336 248 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Aed2g0336 248 Gene3D - 8 82 - -
Aed2g0336 248 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 108 - -
Aed2g0336 248 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 125 247 - -
Aed2g0336 248 MobiDBLite consensus disorder prediction 109 124 - -
Aed2g0336 248 CDD SANT_TRF 6 56 - -
Aed2g0336 248 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0336 Aed-Chr2 2219229 2224198 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0336 1 248 Single Myb Histone (SMH) Gene Family AT1G72740 41.696 2.28e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed2g0336 Myb_DNA-binding 1.5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0336 K09422 - gmx:778177 372.859