Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0334 TTCTCTTTAACTCCACGGTGCAGATCCGAGGAGTTACCCTTTGCTCCCTTTTCTTTCTCTGTCTCTCTCTCTCTTTCTTTATTCTACTTCCAACCCTTCAAACTTCTACCAGTGATGGCAGGTTTGGCTCCAGAAGGAACACAATTCGATGGTCGTCAATATGATGCTAAGATGAATGAATTGCTCTCCACTGATGGGCAAGAATTCTTCACCTCATATGACGAAGTCTATGACAGCTTTGATGCAATGGGATTGCAAGAGAATCTTCTGCGAGGCATATATGCTTATGGTTTTGAGAGGCCTTCTGCTATCCAGCAAAGGGGAATTGTTCCATTCTGCAAAGGTCTGGATGTAATTCAACAGGCTCAGTCTGGAACAGGAAAGACAGCAACATTTTGTTCTGGAATTTTGCAGCAGCTTGATTATGGATTGGTTCAGTGCCAGGCTTTAGTTTTGGCACCAACAAGGGAGCTAGCACAGCAGATTGAGAAAGTTATGCGAGCTCTTGGTGATTACCTGGGTGTTAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTTCGTGAGGATCAGCGCATTCTCCAAGCAGGTGTCCATACTGTTGTTGGCACTCCTGGGCGTGTGTTTGACATGCTGCGGAGGCAGTCTCTTCGCCCAGATTGCATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGATCTATGACATCTTCCAGCTGCTGCCATCCAAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCAGAAGCCCTTGAGATTACAAGGAAGTTCATGAACAAGCCAGTGAGAATCCTAGTAAAGCGTGATGAACTGACTCTGGAGGGTATCAAGCAGTTTTATGTCAATGTTGACAAGGAAGAGTGGAAGCTGGAGACATTATGTGACCTTTATGAGACTCTGGCTATCACCCAGAGTGTCATTTTTGTGAATACCAGGCGCAAGGTGGACTGGCTCACTGACAAGATGCGAAGCAATGATCACACAGTCTCTGCCACCCACGGTGACATGGACCAAAACACACGTGATATCATCATGCGTGAATTCCGGTCTGGCTCTTCTCGAGTTCTCATTACCACGGACCTTCTGGCCCGTGGTATAGACGTGCAGCAAGTGTCTCTTGTCATAAACTATGATCTACCAACCCAACCTGAAAACTATCTCCACCGCATAGGGCGTAGTGGCCGGTTTGGTAGAAAGGGGGTTGCTATAAACTTTGTCACAACTGATGATTCAAGAATGCTGTCTGATATTCAGAAGTTCTACAATGTGATTGTAGAGGAGCTGCCATCAAATGTTGCTGATTTGCTCTGA 1356 0.458 FSLTPRCRSEELPFAPFSFSVSLSLSLFYFQPFKLLPVMAGLAPEGTQFDGRQYDAKMNELLSTDGQEFFTSYDEVYDSFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDSRMLSDIQKFYNVIVEELPSNVADLL 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0334 451 Gene3D - 68 286 IPR027417 -
Aed2g0334 451 CDD DEADc_EIF4A 82 280 - -
Aed2g0334 451 CDD SF2_C_DEAD 291 421 - -
Aed2g0334 451 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 225 233 IPR000629 -
Aed2g0334 451 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 109 279 IPR014001 -
Aed2g0334 451 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 290 451 IPR001650 -
Aed2g0334 451 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 78 106 IPR014014 GO:0003724
Aed2g0334 451 Pfam Helicase conserved C-terminal domain 304 412 IPR001650 -
Aed2g0334 451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 432 IPR027417 -
Aed2g0334 451 Gene3D - 287 451 IPR027417 -
Aed2g0334 451 SMART helicmild6 331 412 IPR001650 -
Aed2g0334 451 Pfam DEAD/DEAH box helicase 103 264 IPR011545 GO:0003676|GO:0005524
Aed2g0334 451 SMART ultradead3 97 294 IPR014001 -
Aed2g0334 451 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 61 451 - -
Aed2g0334 451 PANTHER RNA HELICASE 61 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0334 Aed-Chr2 2204174 2207199 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0334 39 451 Eukaryotic Initiation Factors Gene Family AT1G72730 89.372 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0334 K03257 - gmx:100817948 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1344 1 12515861 12518818 Aed2g0334 2 2204174 2207199 PCT