Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0311 ATGGAGATGAAGGGTTTTATGTTCCACCAACAACAGCAACAAGCAGTAGTAGTGGAGGAGAACATGTCAAATTTGACTTCTGCATCTGGTGAAGCAAGTGCTTCCTCAGGTAACAGAACTGAAATTGGAACCAGTTACATGGCTCCACCACCAAAGAAAAAGAGAAACCTCCCTGGCAACCCAGACCCTGATGCTGAGGTTATAGCCTTGTCCCCAAAGAGTCTTCTTGCAACAAACAGGTTCATTTGTGAGATCTGCAACAAAGGATTTCAAAGAGACCAGAACCTTCAGCTTCACAGAAGAGGGCACAATCTGCCATGGAAGCTGAAGCAGAGAACAAGCAAAGAGGTGAGGAAGAAGGTGTATGTGTGTCCAGAGGCAAGCTGTGTTCATCATGACCCATCAAGGGCCCTGGGGGACCTAACTGGTATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAATATGCAGTTCAATCAGATTGGAAAGCTCACTCGAAAACCTGTGGCACTAGGGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCATTGGCAGAGGAGAGTGCAAGAGCCAATAACCCATCACCACTTCTTCCCCCACAACCACAACCTTCTTCCACCTCTCACCAACACCACCATATGATGAGTCTCCAAACCCAATTCAACCCTCATGGCTTCCCATTGAAAAAAGAGCAGCAAAGTTTCAATGTTATAAGGTCAGAAATGCCCCCTTGGCTTGGCCCACCAGCAACAGTAGTTGTTGATCATCATCTCTCATCATCCATAATGTTCTCTACTCCTCCACACCAAGAAAACCCTAACCCTAGCCTCGGTCCCACTCTTGCTGCTTACCAAACAGTCCCTAACCCTTCCCCGCACATGTCAGCCACAGCATTGCTGCAGAAAGCAGCTCAGATGGGTGCAACCATGAGCAGAAGTGGTTCTTCACCAGCCATGACTAGGCCCCACCATCAGGCTCAGCACGTGTCCTCTTCTGCTGATTCTGCAGCCACTGCTCATTTTGGCTTGAACCTGTCCTCACGTGAAGACACCAACATCAACACCTCAACAACAGCAACTACAACTACTAACACTGCTACAGTGTTCAGCCATGGCTTATTATCATCACCTTTGGGGAATAAAGCTGCTACTGCTGTGTCTTCTTCTGCTCCATCCCTACTTCTTCATGATGTTATCAACTCTTTCTCTTCTCCTTCTGCCTTTGAAGGAACCCCTTTTGAGGATGCGTTTATTGGTGGCATTCAGAGCTCAAAGAAACTAGATGATGATATTGATGATGATGGTCATAACTTGTATTTGCATGACACATTCTCATCAAAAACAAGTATTGGTGCAGCTGGAAATAACGAAGGGTTGACCAGAGATTTCTTGGGTCTTAGGCCTCTCTCTCATACTGATATTCTCACCATTGCTGGCATTGGAAATTGCATCCATGATCAGCAAAATCAATCTCAAAAGCCATGGCAAGGTTAG 1566 0.4642 MEMKGFMFHQQQQQAVVVEENMSNLTSASGEASASSGNRTEIGTSYMAPPPKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARANNPSPLLPPQPQPSSTSHQHHHMMSLQTQFNPHGFPLKKEQQSFNVIRSEMPPWLGPPATVVVDHHLSSSIMFSTPPHQENPNPSLGPTLAAYQTVPNPSPHMSATALLQKAAQMGATMSRSGSSPAMTRPHHQAQHVSSSADSAATAHFGLNLSSREDTNINTSTTATTTTNTATVFSHGLLSSPLGNKAATAVSSSAPSLLLHDVINSFSSPSAFEGTPFEDAFIGGIQSSKKLDDDIDDDGHNLYLHDTFSSKTSIGAAGNNEGLTRDFLGLRPLSHTDILTIAGIGNCIHDQQNQSQKPWQG 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0311 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 103 IPR013087 -
Aed2g0311 521 Pfam Zinc-finger double-stranded RNA-binding 81 103 IPR022755 -
Aed2g0311 521 MobiDBLite consensus disorder prediction 27 43 - -
Aed2g0311 521 MobiDBLite consensus disorder prediction 27 61 - -
Aed2g0311 521 MobiDBLite consensus disorder prediction 334 359 - -
Aed2g0311 521 Gene3D Classic Zinc Finger 62 131 - -
Aed2g0311 521 SMART c2h2final6 81 103 IPR013087 -
Aed2g0311 521 SMART c2h2final6 122 152 IPR013087 -
Aed2g0311 521 SMART c2h2final6 157 177 IPR013087 -
Aed2g0311 521 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 24 506 - -
Aed2g0311 521 MobiDBLite consensus disorder prediction 215 238 - -
Aed2g0311 521 Gene3D Classic Zinc Finger 135 215 - -
Aed2g0311 521 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 506 - -
Aed2g0311 521 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Aed2g0311 521 SUPERFAMILY beta-beta-alpha zinc fingers 80 177 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0311 Aed-Chr2 2053559 2056855 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0311 1 335 IDZ Gene Family AT1G55110 59.155 4.59e-126 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed2g0311 zf-C2H2_jaz 7.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0311 K25870 - gmx:100808344 823.542