Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0308 ATGCAGCCGAAATCTCACACTACTCCTTTTTTGGTTCCTCCCCAAAAGGCTATGAACAACAACAACAACAACAGATCAATCTCAACGCCATCGTCAAGAAATGGCAACAGCACCGCCCAGGCTTGCGCTGCATGCAAGTACCAACGCAGGAAATGCGCTCCCGACTGCATTCTCGCACCTTACTTCCCTCACGACCGCCAGCGCCAGTTCCTGAACGCTCACAAGTTGTTCGGAGTGAGCAACATCACCAAGATCATCAAGCACGTCAGCCCTCAGGACAAGGACCAAGCCATGCGCACCATCATTTACCAGTCCGACATGCGCGCCACGGACCCCGTCGGCGGTTGCTATAGGTACATTCTCGACCTCCAGGCTCAGATCGAGTACCATAGGGCTGAGCTCGAACTCGTCCTTCAACACATCGCCATTTTCAGAGCACAGGCTCACCAACAACACGGTAGTATCTTTGCTCCAAACATCGCTGTGAATGGCGATGGCGAGGTTTTGAATGCTGATCCCATGGGATTGTATAGCCAGCAGCAGCATTATCAGCAGTGTCTACAGCAGCAGCAGCAGCAGCAACCGCAGGAGCAGTATGTTATGATGCATAATAATAATAATAATGAAAACAACAGTAACGTGGTGGTCGAGGTCGAGAATTGTTTGCAGGAACAAATTAACGCGTGGGCGGTGCAGAACACTGCGGTGGCACTTTCTTCATTGTCGTTGCAAGGTCAGGGTAGTAATCTTAGCAGCGATGACTATGATATTGATCACAAGCCGGTCATTGACATTGATTCTGATGAGAGAAGTGAGTTAGGCTTCGAGTCTGAAGACTTAGTCGTCCATCGCAGTGATGAAGCAGTGTTGTTTAAGATAGACGATGCAGTTATAAAAGCCGAGGCTGACTGCATGCAACAAATTCAAGACCATGATCTGAAAGGTGCAGCAACATCGTTTACCCTCACAAATTGTACTTGCTGA 984 0.4909 MQPKSHTTPFLVPPQKAMNNNNNNRSISTPSSRNGNSTAQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKHVSPQDKDQAMRTIIYQSDMRATDPVGGCYRYILDLQAQIEYHRAELELVLQHIAIFRAQAHQQHGSIFAPNIAVNGDGEVLNADPMGLYSQQQHYQQCLQQQQQQQPQEQYVMMHNNNNNENNSNVVVEVENCLQEQINAWAVQNTAVALSSLSLQGQGSNLSSDDYDIDHKPVIDIDSDERSELGFESEDLVVHRSDEAVLFKIDDAVIKAEADCMQQIQDHDLKGAATSFTLTNCTC 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0308 327 Pfam Lateral organ boundaries (LOB) domain 41 136 IPR004883 -
Aed2g0308 327 ProSiteProfiles LOB domain profile. 40 141 IPR004883 -
Aed2g0308 327 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 35 266 - -
Aed2g0308 327 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 35 266 - -
Aed2g0308 327 MobiDBLite consensus disorder prediction 1 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0308 Aed-Chr2 2028949 2030844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0308 40 152 AS2 family AT3G13850 75.221 1.25e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed2g0308 LOB 8.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0308 - - pvu:PHAVU_010G138500g 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0308 2 2028949 2030844 Aed2g0308 2 2028949 2030844 ECH
Aed1g1361 1 12631755 12634383 Aed2g0308 2 2028949 2030844 PCT