Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0297 ATGAAGGCGCAGGAAGCAACCCATTCAAAAATGGGTGAGTTTGAACCCAAACGGCCCAACGAAAACGTGACTTGGGCCAGCAAAGAAACGGCCCAATTATATGGTAGAGAGAAACTGAAAAACGCTTCCATGGTGTTTGTGGAGCTGCAGCAAGAAAAAGAGGAAGCAGTGTGTGTTCGACTTCGTGAAAAAAAAAGCATCATGAGCCGCTACGACAGCCGCTCCGGCGACCCAACTTCCTATCGTGACCGGAGGAGTGATTCTGGGCTAGGTGCACCTACAGGGTTTGGTGGTTCTGTACAACACTCTTCATCAAACAGGAGGGATTATGATGATGGTGGGTCACCTAGGAAGAACGTCAGCTTGGATGGTTTACCTCATTTTGAGAAAAACTTCTATGTTGAGTCACCAGCTGTAAGGGCAATGACAGAGGCTGAGGTTAATGAGTACCGGCAGCAGAGGGAAATAACTGTTGAAGGTCGAGATATCCCCAAACCTGTCAAGACCTTTCATGATGCTGGTTTTCCAGAATATGTGTTGGAAGAAATTACAAAAGCTGGCTTTACTGAACCTACGCCCATTCAGTCTCAAGGTTGGCCCATGGCTTTGAGGGGGCGTGATCTGATAGGAATTGCAGAAACAGGATCAGGGAAGACACTAGCTTACTTGTTGCCTTCCATTGTGCATGTTAATGCTCAGCCGATTCTAAATCCTGGAGATGGACCAATTGTGTTAGTTTTGGCTCCAACTCGTGAACTTGCTGTCCAAATACAACAAGAGGCTACTAAATTTGGTGCATCATCTAGGATTAAGAGTACATGCATCTATGGTGGGGTTCCAAAGGGACCTCAAGTGCGTGATCTCCAGAAAGGTGTCGAAATTGTAATTGCCACTCCAGGAAGGTTAATTGATATGCTTGAGTCAAATCATACCAACTTGCAGAGGGTCACATACCTTGTATTGGATGAAGCTGATAGGATGTTGGATATGGGGTTTGATCCTCAGCTACGGAAGATTGTCTCTCAGATTCGTCCAGACCGTCAAACTTTGTATTGGAGTGCTACCTGGCCAAAGGAGGTCGAACAATTGGCAAGGAAGTTCCTTTATAACCCATACAAAGTAACTATAGGCTCTTCAGATTTAAAAGCTAACCATGCAATACGGCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAAATTGGTAAAGTTGCTAGAGGACATCATGGATGGCAGCCGAATACTGATATTTATGGATACCAAAAAAGGATGTGATCAGATCACTAGGCAACTCCGCATGGATGGATGGCCTGCACTTTCAATTCATGGAGATAAAAGTCAAGCAGAAAGAGATTGGGTTCTCTCAGAATTCAAATCAGGCAAAAGTCCTATTATGACTGCAACAGATGTTGCAGCCCGTGGTTTAGATGTGAAGGATGTGAAATATGTAATAAATTATGACTTCCCGGGGTCACTTGAGGATTATGTTCATCGCATTGGGCGGACAGGGAGAGCTGGTGCAAAAGGAACTGCATACACATTCTTCACAGCTGCTAATGCCAGATTTGCAAAGGAACTTATAGCCATACTTGAGGAAGCTGGACAGAAAGTGGGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCCACCTTTAGGACCACGAGGTTTCCAAGACCGTGGGAGGGGTTATGGCAGTTCTCGTCCATGGAGCTGA 1725 0.4533 MKAQEATHSKMGEFEPKRPNENVTWASKETAQLYGREKLKNASMVFVELQQEKEEAVCVRLREKKSIMSRYDSRSGDPTSYRDRRSDSGLGAPTGFGGSVQHSSSNRRDYDDGGSPRKNVSLDGLPHFEKNFYVESPAVRAMTEAEVNEYRQQREITVEGRDIPKPVKTFHDAGFPEYVLEEITKAGFTEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPSIVHVNAQPILNPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLQRVTYLVLDEADRMLDMGFDPQLRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYNPYKVTIGSSDLKANHAIRQYVDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIAILEEAGQKVGPELAAMGRGAPPPPLGPRGFQDRGRGYGSSRPWS 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0297 574 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 199 374 IPR014001 -
Aed2g0297 574 SMART ultradead3 187 390 IPR014001 -
Aed2g0297 574 CDD DEADc_DDX5_DDX17 179 375 - -
Aed2g0297 574 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 320 328 IPR000629 -
Aed2g0297 574 Gene3D - 131 375 IPR027417 -
Aed2g0297 574 MobiDBLite consensus disorder prediction 69 84 - -
Aed2g0297 574 SMART helicmild6 427 508 IPR001650 -
Aed2g0297 574 MobiDBLite consensus disorder prediction 69 123 - -
Aed2g0297 574 PANTHER LD32873P 122 562 - -
Aed2g0297 574 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 122 562 - -
Aed2g0297 574 MobiDBLite consensus disorder prediction 1 24 - -
Aed2g0297 574 Pfam Helicase conserved C-terminal domain 399 508 IPR001650 -
Aed2g0297 574 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 168 196 IPR014014 GO:0003724
Aed2g0297 574 Gene3D - 376 548 IPR027417 -
Aed2g0297 574 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 402 547 IPR001650 -
Aed2g0297 574 CDD SF2_C_DEAD 387 517 - -
Aed2g0297 574 MobiDBLite consensus disorder prediction 1 17 - -
Aed2g0297 574 Pfam DEAD/DEAH box helicase 192 363 IPR011545 GO:0003676|GO:0005524
Aed2g0297 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 523 IPR027417 -
Aed2g0297 574 MobiDBLite consensus disorder prediction 543 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0297 Aed-Chr2 1935744 1941282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0297 155 528 Eukaryotic Initiation Factors Gene Family AT3G19760 34.133 1.21e-75 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0297 K12823 - gmx:100790464 983.4