Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0273 ATGGAAAGCAATGTTGAAGCAGAAAGCAATCAAGGAAAAGTTGCTGCTTCTGCAGCACCAGTGAAGAAGGATTTAACATGCAAGTATTGCAACAAGAAGTTCAGTAATTACCAAGCATTGGGAGGGCATCAGAATGCACACAAGGATGAAAGAGCAGCAGCACAAAAGGAGAAGATTCTAAGCATGGCTTCTGCTTATGATCACAAAAATTCATATGCTGGTGGGTTTGTTAATTCAAACCAATCTTATTACGGATTAGAGGCCAAAGGGTCTGATCATGAGAATTCTGGTGAAGCAAACAATTTTTCTTCAATGCCTGCCAATGAAGACGTGAAGGAGATTGATTTGACTCTCAAGATTTAA 363 0.3967 MESNVEAESNQGKVAASAAPVKKDLTCKYCNKKFSNYQALGGHQNAHKDERAAAQKEKILSMASAYDHKNSYAGGFVNSNQSYYGLEAKGSDHENSGEANNFSSMPANEDVKEIDLTLKI 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0273 120 ProSiteProfiles Zinc finger C2H2 type domain profile. 25 52 IPR013087 -
Aed2g0273 120 PANTHER ZINC FINGER PROTEIN KNUCKLES 10 76 - -
Aed2g0273 120 SUPERFAMILY beta-beta-alpha zinc fingers 23 52 IPR036236 -
Aed2g0273 120 Gene3D Classic Zinc Finger 10 81 - -
Aed2g0273 120 MobiDBLite consensus disorder prediction 87 106 - -
Aed2g0273 120 PANTHER ZINC FINGER PROTEIN JAGGED 10 76 IPR045320 GO:0003700
Aed2g0273 120 ProSitePatterns Zinc finger C2H2 type domain signature. 27 47 IPR013087 -
Aed2g0273 120 Pfam C2H2-type zinc finger 27 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0273 Aed-Chr2 1780867 1781547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0273 25 120 C2H2 Transcription Factor Family AT5G57520 33.333 1.29e-12 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed2g0273 zf-C2H2_6 3.7e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0273 - - gmx:102668090 140.969