Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0257 ATGGATGATCTGAGTTGGGATGCCTCACAACTGTGGAGTACTACTATTCAGCAAGCACCAGACTTTGAAGGAGGATACTCCATGCCCAATGTTCTGAATCAAATACAAGAGATGCAGAAAGCTCAAACAGGTCATGCATACTCAAATTCTGAGATATTAATGGATGTGATGCAAAAGCAAAACACAAATCTTTCACAGCATGTGTCAACCATGGCAGTGAAACCAGGAGCTGGAGCCAGTTGGGGAGAAACTTTAACATCCCAATCATACCCATCCCTATCAGTCAATGGACCTCACAGTATGAACCTGATTAGCAACTACATGCCAGATTTCAACATGGCCCACCACCAACAACAACTTGTCAATGGAAAGGGTGGTGCTTGCTCTCTTAAGTCTCTTGACTGCTTGATTTCAGCCACCAACAGCAACACAGACACTTCTGCTGAAGATGATGGGATCTCAATGATTTTATCAGACCGTGGAAACCTGTGGAACATCAGTTATGCCGGCAGTGCAGCTTCCACTGGTGAATCTGAGAGCAATGCTTCCAATGGTAGAAACAAAGACATGCACTGTACTCCAGTCAATGAAGTTGATCATCATGAAACAGCTTCTCAAAGCTACTCCTCGGAGAGAGGAAAAACAGTACAATCAGAGGCTAATTATTCAAAGAGGAGTCGTGATCAATCTGAAATGATCAAAGTTGGTGATTCCTGCTTCCGAATTGTTCAGAATTCTTCTTCTGTTGAAGAAGGTGGCTTCAGACTCATCTTAGACAATCCACCACCAGAATGCAAGAAACCCAGATGGGATATGAGTTCCTCTTCTTCAAATAATATAAATTTCCAGCAACCAAATTCGTCTGCATCTTCCATTAATGAGGAACCTGATCCAGAGGTAATTGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGACCAGTGAACCTTGGCTTGGATATGGTTGAAAAGCCAAAGAGGAAGAATGTGAGGACTTCAACTGATCCACAAACAGTGGCTGCAAGGCACAGAAGGGAGAGAATAAGTGAGAAGATTAGGGTTTTGCAGAAGCTTGTTCCTGGAGGAAGCAAGATGGACACAGCATCAATGCTTGATGAGGCTGCAAACTACCTCCAGTTTCTCAAGTCACAGATCAAGGCACTGGAAAGTCTAGGGAACAAAGTTGAAGCAATGAATTGTCCACCTACTAGCATTGCCTTCTCTTTCAATCCTTCTTTTCCCATGCAAACATCCCTCAGTCACATCCATCATGACCCTTAA 1287 0.432 MDDLSWDASQLWSTTIQQAPDFEGGYSMPNVLNQIQEMQKAQTGHAYSNSEILMDVMQKQNTNLSQHVSTMAVKPGAGASWGETLTSQSYPSLSVNGPHSMNLISNYMPDFNMAHHQQQLVNGKGGACSLKSLDCLISATNSNTDTSAEDDGISMILSDRGNLWNISYAGSAASTGESESNASNGRNKDMHCTPVNEVDHHETASQSYSSERGKTVQSEANYSKRSRDQSEMIKVGDSCFRIVQNSSSVEEGGFRLILDNPPPECKKPRWDMSSSSSNNINFQQPNSSASSINEEPDPEVIAQMKEMIYRAAAFRPVNLGLDMVEKPKRKNVRTSTDPQTVAARHRRERISEKIRVLQKLVPGGSKMDTASMLDEAANYLQFLKSQIKALESLGNKVEAMNCPPTSIAFSFNPSFPMQTSLSHIHHDP 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0257 428 MobiDBLite consensus disorder prediction 270 294 - -
Aed2g0257 428 MobiDBLite consensus disorder prediction 200 223 - -
Aed2g0257 428 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 339 396 IPR036638 GO:0046983
Aed2g0257 428 MobiDBLite consensus disorder prediction 269 294 - -
Aed2g0257 428 Gene3D - 337 402 IPR036638 GO:0046983
Aed2g0257 428 Coils Coil 373 393 - -
Aed2g0257 428 MobiDBLite consensus disorder prediction 200 229 - -
Aed2g0257 428 Pfam Helix-loop-helix DNA-binding domain 344 383 IPR011598 GO:0046983
Aed2g0257 428 SMART finulus 340 389 IPR011598 GO:0046983
Aed2g0257 428 MobiDBLite consensus disorder prediction 174 190 - -
Aed2g0257 428 PANTHER TRANSCRIPTION FACTOR BHLH87 59 422 - -
Aed2g0257 428 MobiDBLite consensus disorder prediction 174 193 - -
Aed2g0257 428 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 334 383 IPR011598 GO:0046983
Aed2g0257 428 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 59 422 IPR045843 GO:0003700|GO:0006355
Aed2g0257 428 CDD bHLH_AtIND_like 335 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0257 Aed-Chr2 1682261 1683547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0257 76 426 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 45.822 4.27e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed2g0257 HLH 4.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0257 - - gmx:100793975 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0257 2 1682261 1683547 Aed2g0257 2 1682261 1683547 ECH
Aed1g1389 1 12791846 12793189 Aed2g0257 2 1682261 1683547 PCT