Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0235 ATGTGGCAAAGAAGCCACAAGTCATCAGAGGAGAGGAAACTGGAGCTTAGGCTTGGTCCACCTGGTGAAGACTCTCTCAATGAAAGCATAAAAAAATGCAACAGAGATAGAAATAAATCACCACTCACTCTTGGTGGGGCTATGTTACCCTTTGCATGGCCTTCCAGTTCCACATCCTATCATCAACACCAGGCTAAAGCTAAAGCTAAAGCTTCATCATTTCTTCAGCTCCAATCAATTCCACAAAACATGATAGTGATGGGAAATGTGTCACAATTCTGTTGTGTAGAGAAGAAGGCATTCTCACCCTCTTGTGCAAATCCAGCGGTATCCAAAAGAACTGCTTCAGGTCCAGTAGTGGGTTGGCCTCCAATTCGTTCCTTCAGGAAGAACATTGCAAGTGGAAGCACTTCTAAGTTGCCTTCTGGGTCCCAGCAACATCAAAATGTTGCTCCAGACAAGGTCTCTAGCATAAAACCTACTGACAACTCTGGTAAAGGCTTGTTTGTGAAGATCAATATGGATGGTGTCCCCATTGGGAGAAAAGTCGACATCAATGCTTATGACAGCTATGAAAAACTTTCCTCTGCTGTTGATGAACTCTTTAGGGGCCTCCTTGCAGAGATGAAGTTATCACATATTGCCTCTTCCCAATGCTGTTCTGGTCAAAGAGATTCCTGTGCTGGTGGAATTCAAAACAAGGAACAGGAAGAGAAATCCAATACGATTTTATTGGTTGGAAGTGGGGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGAGATGTTCCGTGGCACATGTTTGTGTCTACAGTGAAGAGGCTGAGGGTGTTGAAGAGTTCTGATCTTCCTGCTTTTACCCTTGGTTGTAAGCAAGACTAG 897 0.4359 MWQRSHKSSEERKLELRLGPPGEDSLNESIKKCNRDRNKSPLTLGGAMLPFAWPSSSTSYHQHQAKAKAKASSFLQLQSIPQNMIVMGNVSQFCCVEKKAFSPSCANPAVSKRTASGPVVGWPPIRSFRKNIASGSTSKLPSGSQQHQNVAPDKVSSIKPTDNSGKGLFVKINMDGVPIGRKVDINAYDSYEKLSSAVDELFRGLLAEMKLSHIASSQCCSGQRDSCAGGIQNKEQEEKSNTILLVGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSDLPAFTLGCKQD 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0235 298 MobiDBLite consensus disorder prediction 1 19 - -
Aed2g0235 298 MobiDBLite consensus disorder prediction 133 158 - -
Aed2g0235 298 Gene3D - 162 296 - -
Aed2g0235 298 SUPERFAMILY CAD & PB1 domains 163 282 - -
Aed2g0235 298 Pfam AUX/IAA family 14 288 IPR033389 -
Aed2g0235 298 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 297 IPR003311 GO:0005634|GO:0006355
Aed2g0235 298 ProSiteProfiles PB1 domain profile. 167 285 IPR000270 GO:0005515
Aed2g0235 298 MobiDBLite consensus disorder prediction 1 29 - -
Aed2g0235 298 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 3 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0235 Aed-Chr2 1569666 1572930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0235 179 293 B3 DNA Binding Superfamily AT5G20730 24.348 1.47e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aed2g0235 AUX_IAA 1.8e-66 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0235 2 1569666 1572930 Aed1g1402 1 12887631 12891881 ECH
Aed2g0235 2 1569666 1572930 Aed2g0235 2 1569666 1572930 ECH
Aed1g1402 1 12887631 12891881 Aed2g0235 2 1569666 1572930 PCT