Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0223 ATGTCCTGCAAGGATGGTAGCAAAAACGGAAACGGAAACGGAATCGGAATCGGAATCGGAATGGATAACGGGAAGTATGTCCGTTACACACCTGAGCAGGTTGAAGCCTTGGAGAGGCTCTATCACGATTGCCCCAAACCAAGTTCCATTCGCCGCCAGCAGCTCATTCGCGAATGTCCCATTCTCTCCAACATTGAGCCCAAGCAAATCAAGGTTTGGTTCCAGAACAGAAGATGTAGAGAGAAGCAGAGAAAGGAGTCGTCGCGCCTGCAAGGTGTAAATAGGAAGTTGACTGCGATGAACAAGTTGCTGATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCTCATCTGGTGTATGAAAATGGTTATTTTCGTCAACACACCCAGAATACTACGCAGGCAACCAAAGACACAAGCTGTGAATCAGCTGTGACGAGTGGTCGGCACAATTTGACAACTCAACATCCCCCACGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAATTTCTTTCTAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCTAGAGCCTGTGGTCTGGTGGGACTAGAACCCACTAGGGTTGCAGAAATCCTCAAAGATCGGCCTTTGTGGTTTCGTGATTGCCGAGCTGTTGATGTTCTCAATGTGCTGCCCACAGCAAATGGTGGAACCGTAGAGCTACTTTATATGCAGCTATATGCACCAACAACATTGGCTCCTGCTCGAGACTTCTGGTTGTTGCGCTACACTTCTGTCTTAGAAGATGGAAGCCTGGTGATCTGTGAGAGGTCTCTTAAAAATACTCAGAATGGTCCAAGCATCCCTCCCGTGCAGCACTTTGTTAGAGCAGAGATGCTGCCTAGTGGGTACCTGATCAGGCCTTGTGAAGGAGGTGGTTCCATCATACACATTGTTGATCATATGGATTTAGAGCCATGGAGTGTGCCAGAAGTGCTACGTCCACTGTACAAATCATCAACAGTACTGGCTCAGAAGACAACTATGGCGGCTCTACGTCATCTAAGGCAGATTTCACATGAAGTTTCTCAGTCCAACGTCACTGGATGGGGTAGACGACCAGCAGCACTGCGAGCTCTTAGCCAAAGATTGAGCAGGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGTTGGACAACAATTGGTAATGATGGTGTAGATGATGTTACTATACTAGTGAATTCATCCCCTGACAAGTTAATGGGTCTGAATCTTTCCTTTGCCAATGGATTTCCGTCTGTCAGTAATGCAGTGCTATGTGCCAAAGCATCAATGCTATTACAGAATGTGCCCCCTGCCATTCTCCTAAGGTTCCTGCGGGAGCATAGATCAGAATGGGCAGACAACAATATGGATGCTTACACAGCTTCTGCTATTAAAGTTGGCCCTTGCAGCTTATCAGGATCTCGTGTTGGAAACTATGGAGGTCAAGTTATACTCCCCCTAGCACACACAATTGAGCATGAGGAGTTTTTGGAAGTCATTAAATTGGAAGGAATTGCTCATTCTCCTGAAGACACAATAATGCCCAGAGAAATGTTGCTTTTGCAACTCTGCAGTGGAATGGATGAGAATGCTGTTGGCACTTGTGCTGAACTTATATCTGCTCCAATTGATGCTTCCTTTGCTGATGATGCCCCCCTTCTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGGAAGCTTCCAGCCCCAATCGCACTCTTGACCTTGCATCTGCCCTTGACGTTGGTCCCAGTGGAAACCGATCTTCAAATGAATGTGCTGGAAATTCTAGCTGTATGAGATCCGTGATGACAATAGCATTTGAATTTGCATTTGAAAGCCATATGCAAGAGCATGTAGCATCTATGGCACGTCAATATGTTCGGAGTATTATATCATCGGTCCAAAGGGTAGCATTAGCGCTTTCTCCTTCTCATTTGAGTTCACATGCAGGGCTTAGGTCACCATTGGGTACTCCTGAAGCACAAACCCTTGCTCATTGGATCTGCAACAGTTATAGGTGCTACTTGGGTGTGGAGCTACTTAAATCTGATAACGAGGGGAATGAATCTTTGCTCAAGTCCTTGTGGCAACATTCAGATGCAATATTGTGTTGCACTCTAAAGGCATTGCCAGTGTTCACTTTCTCGAACCAGGCTGGGCTTGACATGCTGGAAACCACCCTAGTTGCATTACAAGATATAACTTTAGAGAAAATATTTGATGATCATGGACGAAAAATTCTGTTTTCAGAGTTTCCCCAGATTATTCAGCAGGGTTTTGCATGTCTTCAAGGTGGTATTTGTCTTTCAAGCATGGGGCGACCTATCTCATACGAAAGAGTTGTTGCTTGGAAGGTGCTGAATGAAGAAGAGAATGCTCATTGTATTTGCTTTATGTTTATGAACTGGTCTTTTGTTTGA 2541 0.4581 MSCKDGSKNGNGNGIGIGIGMDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQGVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYFRQHTQNTTQATKDTSCESAVTSGRHNLTTQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAVDVLNVLPTANGGTVELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSIPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYKSSTVLAQKTTMAALRHLRQISHEVSQSNVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWTTIGNDGVDDVTILVNSSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYTASAIKVGPCSLSGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGIAHSPEDTIMPREMLLLQLCSGMDENAVGTCAELISAPIDASFADDAPLLPSGFRIIPLESGKEASSPNRTLDLASALDVGPSGNRSSNECAGNSSCMRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHAGLRSPLGTPEAQTLAHWICNSYRCYLGVELLKSDNEGNESLLKSLWQHSDAILCCTLKALPVFTFSNQAGLDMLETTLVALQDITLEKIFDDHGRKILFSEFPQIIQQGFACLQGGICLSSMGRPISYERVVAWKVLNEEENAHCICFMFMNWSFV 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0223 846 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 846 IPR044830 GO:0003700
Aed2g0223 846 ProSiteProfiles START domain profile. 159 373 IPR002913 GO:0008289
Aed2g0223 846 SUPERFAMILY Bet v1-like 405 604 - -
Aed2g0223 846 SMART HOX_1 22 88 IPR001356 GO:0003677
Aed2g0223 846 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 846 - -
Aed2g0223 846 Pfam MEKHLA domain 703 845 IPR013978 -
Aed2g0223 846 Gene3D - 203 384 IPR023393 -
Aed2g0223 846 SUPERFAMILY Bet v1-like 168 378 - -
Aed2g0223 846 SMART START_1 168 378 IPR002913 GO:0008289
Aed2g0223 846 Gene3D - 20 91 - -
Aed2g0223 846 MobiDBLite consensus disorder prediction 130 158 - -
Aed2g0223 846 MobiDBLite consensus disorder prediction 130 161 - -
Aed2g0223 846 CDD bZIP 77 116 - -
Aed2g0223 846 SUPERFAMILY Homeodomain-like 25 86 IPR009057 -
Aed2g0223 846 Pfam Homeodomain 25 83 IPR001356 GO:0003677
Aed2g0223 846 CDD homeodomain 25 85 IPR001356 GO:0003677
Aed2g0223 846 CDD START_ArGLABRA2_like 163 378 - -
Aed2g0223 846 Pfam START domain 169 377 IPR002913 GO:0008289
Aed2g0223 846 Coils Coil 94 114 - -
Aed2g0223 846 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0223 Aed-Chr2 1472483 1479547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0223 1 798 Homeobox Transcription Factor Family AT1G52150 83.375 0.0 1384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed2g0223 START 8.8e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0223 K09338 - gmx:100800165 1629.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0223 2 1472483 1479547 Aed2g0223 2 1472483 1479547 ECH
Aed1g1413 1 12978708 12985994 Aed2g0223 2 1472483 1479547 PCT