Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0222 ATGGAAGCGCCAGAATACTTCATCGGAGGCTATTTTGGCGCCGGAGGAGCCGAACGGTTCTCGCCGCCTGAGAAGCGATACTCCGACCAGAAAACCGGCGAGCCTTTCGCCATTGACGACCTCCTCGACTTCTCCCACGCCGACGCCATCATGTCCGACGGTTTCTTCGACAATGTCGCCGGAAACTCTACCGACTCTTCCACCGTCACCGCCGTTGACAGCTGCAACTCCTCAATTTCCGGCAGCGACAACCGCTTCGCCTCTGCCATTGTCCCTCGCGGCTTCGTAGGCGATCCTCAATTCTCCGGAGAACTCTGCGTTCCGTATGATGAGATGGCGGAACTGGAATGGCTCTCGAACTTCGTGGAAGACTCGTTCTCCGCCGAGGAGGAGCTAAAGACACTGCAGCTACTCTCCGGCGGCGCCACGTCCACCGCCATTGGCGCGAAACCGCAGACGCCGGAGTCCTCCTCCTCCACCGACACGCTTCCGTCGTTCGCTTCGGACGACACCGCGCGAAACGCACCGTTTCTCCACTCGGAAACTCCTCTCCCAGGGAAGGCGCGCAGCAAGCGCTCCCGCGCGGCGCCGGGAGACTGGTCCACGCGCCTGCTCCACCTGGTCGCACCGGAGCAGGAGAATCTGGCGCAGGCGAAGGTGGCGCTGGCGAAGAAGAGAGAGGGAACGAATGCGGAGTGTTCCGGACGGAAATGCCTCCACTGCGGAGCGGAGAAGACGCCGCAGTGGCGAACGGGACCGATGGGACCGAAGACGCTTTGCAACGCGTGCGGCGTGAGGTTCAAGTCCGGTAGGCTGGTGGCGGAGTACCGGCCGGCGGCGAGTCCGACATTCATGTCGACGAAACATTCGAATTCGCATCGGAAGGTTTTGGAGCTGAGGCGGCAGAAGGAGCTTCAGCGACAGCAGCATCAGCAATTGATGAGTCAAACTTCAATTTTCGGCGTATCCAACGGAGATGAGTTCTTGATCCATCATCATCACCATTGTGGGCCAGATTTTAGGCACGTTATTTAG 1035 0.599 MEAPEYFIGGYFGAGGAERFSPPEKRYSDQKTGEPFAIDDLLDFSHADAIMSDGFFDNVAGNSTDSSTVTAVDSCNSSISGSDNRFASAIVPRGFVGDPQFSGELCVPYDEMAELEWLSNFVEDSFSAEEELKTLQLLSGGATSTAIGAKPQTPESSSSTDTLPSFASDDTARNAPFLHSETPLPGKARSKRSRAAPGDWSTRLLHLVAPEQENLAQAKVALAKKREGTNAECSGRKCLHCGAEKTPQWRTGPMGPKTLCNACGVRFKSGRLVAEYRPAASPTFMSTKHSNSHRKVLELRRQKELQRQQHQQLMSQTSIFGVSNGDEFLIHHHHHCGPDFRHVI 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0222 344 Pfam GATA zinc finger 238 271 IPR000679 GO:0006355|GO:0043565
Aed2g0222 344 ProSitePatterns GATA-type zinc finger domain. 238 263 IPR000679 GO:0006355|GO:0043565
Aed2g0222 344 MobiDBLite consensus disorder prediction 145 169 - -
Aed2g0222 344 SMART GATA_3 232 282 IPR000679 GO:0006355|GO:0043565
Aed2g0222 344 Gene3D - 233 316 IPR013088 GO:0006355|GO:0008270
Aed2g0222 344 ProSiteProfiles GATA-type zinc finger domain profile. 232 268 IPR000679 GO:0006355|GO:0043565
Aed2g0222 344 PANTHER GATA TRANSCRIPTION FACTOR 1 344 - -
Aed2g0222 344 CDD ZnF_GATA 237 284 IPR000679 GO:0006355|GO:0043565
Aed2g0222 344 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 235 295 - -
Aed2g0222 344 MobiDBLite consensus disorder prediction 145 197 - -
Aed2g0222 344 PIRSF Txn_fac_GATA_plant 20 325 IPR016679 GO:0003677|GO:0005634|GO:0045893
Aed2g0222 344 PANTHER GATA TRANSCRIPTION FACTOR 9 1 344 - -
Aed2g0222 344 Coils Coil 296 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0222 Aed-Chr2 1466133 1467898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0222 34 344 C2C2-Gata Transcription Factor Family AT4G32890 45.988 2.02e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed2g0222 GATA 4.5e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0222 - - gmx:100776605 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0222 2 1466133 1467898 Aed2g0222 2 1466133 1467898 ECH