Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0167 ATGGCGAAAGAAGGTGATGATGATCTTGGACTTGAAATCACTGAGCTAAGGTTGGGTCTACTACCCGATGTGAATGAGAAGAAGAAGAGGGCCTTCTCGCAAATTGATGATGAAAATAGCAGCTCCGGCGGTGACCGGAAAATCGAGAGCAAGACTCAAGTGGTGGGGTGGCCTCCGGTGTGCTCGTACCGGAAGAAGAACACCGTGAACCAAGCTTCCAAAATGTACGTCAAGGTTAGCATGGACGGTGCTCCTTTCTTGCGTAAGATTCATTTGCCTCTGCATAAGGGCTACTCAGATTTCGCCTTCGCTTTGGAGAACCTCTTTGCTTCCTCTGGAATTGTGGAGGCGTTGAAGAATGCGGACAATTCTGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTTGTTGGAGATGTCCCTTGGGAAATGTTTATGGAGTCATGCAAGAGGCTGAGGATTATGAAGAGATCAGATGCGAAGGGCTTCGATTTGCAACCAAAAGGATCTTTAAAGGGATTCATAGAAAGCGTGGCAAAGTGA 552 0.4728 MAKEGDDDLGLEITELRLGLLPDVNEKKKRAFSQIDDENSSSGGDRKIESKTQVVGWPPVCSYRKKNTVNQASKMYVKVSMDGAPFLRKIHLPLHKGYSDFAFALENLFASSGIVEALKNADNSEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKRSDAKGFDLQPKGSLKGFIESVAK 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0167 183 MobiDBLite consensus disorder prediction 30 45 - -
Aed2g0167 183 Gene3D - 68 171 - -
Aed2g0167 183 SUPERFAMILY CAD & PB1 domains 69 159 - -
Aed2g0167 183 Pfam AUX/IAA family 36 166 IPR033389 -
Aed2g0167 183 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 167 IPR003311 GO:0005634|GO:0006355
Aed2g0167 183 MobiDBLite consensus disorder prediction 30 49 - -
Aed2g0167 183 PANTHER AUXIN-RESPONSIVE PROTEIN 11 167 - -
Aed2g0167 183 ProSiteProfiles PB1 domain profile. 74 162 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0167 Aed-Chr2 1123827 1126104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0167 72 181 B3 DNA Binding Superfamily AT4G23980 31.818 1.40e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aed2g0167 AUX_IAA 2.4e-42 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0167 K14484 - gmx:100791342 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0167 2 1123827 1126104 Aed2g0167 2 1123827 1126104 ECH
Aed2g0167 2 1123827 1126104 Aed1g1471 1 13323208 13325692 PCT