Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0135 ATGGGAGAATTGAAGGACACTGAGGCTTACGAGGAAGAGCTCATCGACTACGAAGAAGAAGATGAAAAAGCTCCCGATTCTGCTAAACCCGTTGCTGAATCTGGCAAGAAGGGTTATGTTGGCATCCATAGTTCGGGATTTCGAGACTTTCTGTTGAAACCAGAGCTTCTTCGAGCCATTGTAGATTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATGCATCCCTCAAGCAATCTTAGGAATGGATGTCTTATGCCAAGCAAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTGTCAACACTTCAGCAAGTTGATCCTGTTCCTGGTCAAGTTGCAGCTCTTGTTCTTTGCCACACAAGAGAACTGGCTTATCAGATTTGCCACGAATTTGAGAGATTCAGCACATATCTTCCTGATATAAAGGCTGCTGTTTTCTATGGTGGTGTCAACATCAAGGTTCACAAAGAATTGCTCAAGAATGAATGCCCACATATTGTTGTTGGAACACCTGGGAGGATTCTTGCTTTGGCTAGAGATAAGGAACTTGGTTTAAAGAATGTGAGGCATTTTATACTTGATGAGTGTGACAAGATGCTCGAATCACTTGATATGAGAAGAGATGTGCAAGAGATTTTTAAATTGACTCCCCATGATAAGCAAGTGATGATGTTTTCAGCTACACTCAGCAAAGACATCCGACCTGTTTGCAAGAAATTTATGCAAGATCCCATGGAAATTTATGTTGATGATGAGGCCAAATTGACTCTTCATGGTCTTGTCCAGCACTATATCAAATTGCAAGAGACAGAAAAGAATCGTAAGCTGAATGATCTTCTTGATGCTCTGGACTTCAACCAAGTAGTTATTTTTGTCAAAAGTGTCACCAGAGCTGCAGAGTTGAACAAGTTGCTTGTGGAGTGTAACTTCCCATCTATCTGCATACATTCTGCAATGTCACAGGAAGAGAGATTGAAACGATACAAGGGCTTCAAAGAAGGGAAGCAAAGGATTCTCGTGGCAACGGATTTAGTAGGAAGGGGGATTGACATAGAACGTGTTAATATAGTTATTAACTATGACATGCCTGATTCTGCTGATACTTACTTGCACAGGGTGGGAAGAGCTGGTAGATTTGGAACGAAGGGGCTTGCAATTACTTTTGTGTCCTCTACGGCTGACTCTGAGGTTCTTAATCAGTGCCAAACTGATGACGTTTTGGAACTATTAGGAGGAAGATCTCGAAGGTTTAAGGATTGGGGAATGGATTAG 1278 0.4186 MGELKDTEAYEEELIDYEEEDEKAPDSAKPVAESGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQVDPVPGQVAALVLCHTRELAYQICHEFERFSTYLPDIKAAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALARDKELGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKDIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQETEKNRKLNDLLDALDFNQVVIFVKSVTRAAELNKLLVECNFPSICIHSAMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTADSEVLNQCQTDDVLELLGGRSRRFKDWGMD 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0135 425 Pfam Helicase conserved C-terminal domain 275 382 IPR001650 -
Aed2g0135 425 SMART helicmild6 301 382 IPR001650 -
Aed2g0135 425 CDD DEADc_DDX39 44 251 - -
Aed2g0135 425 CDD SF2_C_DEAD 262 391 - -
Aed2g0135 425 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 26 405 - -
Aed2g0135 425 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 26 405 - -
Aed2g0135 425 Gene3D - 258 410 IPR027417 -
Aed2g0135 425 Gene3D - 41 257 IPR027417 -
Aed2g0135 425 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 45 73 IPR014014 GO:0003724
Aed2g0135 425 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 76 249 IPR014001 -
Aed2g0135 425 SMART ultradead3 64 265 IPR014001 -
Aed2g0135 425 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 277 425 IPR001650 -
Aed2g0135 425 MobiDBLite consensus disorder prediction 1 32 - -
Aed2g0135 425 Pfam DEAD/DEAH box helicase 70 235 IPR011545 GO:0003676|GO:0005524
Aed2g0135 425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 395 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0135 Aed-Chr2 944418 949493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0135 1 404 Eukaryotic Initiation Factors Gene Family AT5G11200 81.166 0.0 705
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0135 K12812 - gmx:100799082 783.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0135 2 944418 949493 Aed2g0135 2 944418 949493 ECH