Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0088 ATGGCCAGACCCCAACAACGCTATCGTGGAGTCCGCCAAAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTTTATTGAAGACTAGAATATGGCTAGGAACCTTTGAAACAGCAGAGGATGCAGCAAGAGCATATGATGAAGCAGCTAGACTGATGTGTGGGCCAAAAGCACGCACCAATTTCACATACAACCCCAATGAACCACATTCATCCTCATCCAAGCTTCTCTCAGCCACTTTAACGGCTAAGTTACATAAGTGTCACATGGCTTCTCTTTCCCTTCAAATGGCCAAGCAGAAACCACCACAGAACAAAGAGCCTCAACCTCAACCTCAATCATCATCACACTGCTCCTCTGCCAATGCAATTGCTGGATCAAGCTCTGACACTGCTTTTAGATGGCTTGGCATGGAACCTCAGGTTGAAGTTTCCCATCAACAGTTTCAGCCAGTTCTTGAAGATCATCACATAGACCAGATGATACAAGAGTTGCTTCACTATGGATCAATTGAGCTTTGCTCTGTTGCCTCAACCTAG 543 0.4678 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFTYNPNEPHSSSSKLLSATLTAKLHKCHMASLSLQMAKQKPPQNKEPQPQPQSSSHCSSANAIAGSSSDTAFRWLGMEPQVEVSHQQFQPVLEDHHIDQMIQELLHYGSIELCSVAST 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0088 180 MobiDBLite consensus disorder prediction 98 125 - -
Aed2g0088 180 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Aed2g0088 180 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Aed2g0088 180 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Aed2g0088 180 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Aed2g0088 180 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Aed2g0088 180 PANTHER ETHYLENE RESPONSE FACTOR 1 176 - -
Aed2g0088 180 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Aed2g0088 180 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 176 - -
Aed2g0088 180 CDD AP2 6 63 IPR001471 GO:0003700|GO:0006355
Aed2g0088 180 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0088 Aed-Chr2 621628 622323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0088 1 180 AP2-EREBP Transcription Factor Family AT5G25190 64.286 7.76e-76 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed2g0088 AP2 7.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0088 - - gmx:100527365 264.618