Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0083 ATGGATCTTCAAAGGCAAGAGCCATGCCCTTCTGAAAATTTGAACATCACCACATTTTCAGACACTTTGTCGTGCCTGAAACCTTCCATAGACACTCAAACAAAGATGAATCACACAGAAAAGGAAGATCAAAAACACCCACATGACTCGGTTCCTCGTGTTTTACTAGATCTAAGTCTCTCCAATAAGGATTCAGGTGATGATGACTCAAAGCCAGAACTCAACCTCCTCAATTGTTTCCATACAAATTTCTCTGAAAACTCATCAGAATCTAGTCATGGAAATGAACTGGATCCTCGAGTTTTCCCATGCAACTACTGCCAAAGAAAGTTTTATAGTTCCCAGGCACTAGGGGGACACCAGAATGCACACAAACGTGAAAGAACACTGGCAAGAAGAGGATACAAAGCTGGTGCAGCAGAATTTGGACACACATACTCCAACATGCATTTTCTGCCTTCACATGGCTTATACAACAAAGCACTTGGAATTCAGGTTCATTCTATGATTAACAAACCTTCTTATCAAACACCCTTTTTTGGGTTGTGCCGTCCCAATGGGTGGCAGAGGCAACCTTTGGATTCACAACCAGCAATTGGGAACTTTCGTGTGGGGGCAGAAACTGAGTCATCCTTGGCTGATAGTGTTCCAAAGTTAGGCAAGTTTTCCACAAAGGGGTTTGGAGGTTACTGCTTTGGTAGCATTACTCATTTGAAGTCTAAACAACAAGAGAAGTTGCAGAAGCTTGACTTGTCCCTTAAGCTCTAA 768 0.4245 MDLQRQEPCPSENLNITTFSDTLSCLKPSIDTQTKMNHTEKEDQKHPHDSVPRVLLDLSLSNKDSGDDDSKPELNLLNCFHTNFSENSSESSHGNELDPRVFPCNYCQRKFYSSQALGGHQNAHKRERTLARRGYKAGAAEFGHTYSNMHFLPSHGLYNKALGIQVHSMINKPSYQTPFFGLCRPNGWQRQPLDSQPAIGNFRVGAETESSLADSVPKLGKFSTKGFGGYCFGSITHLKSKQQEKLQKLDLSLKL 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0083 255 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 37 255 IPR044246 GO:0009788
Aed2g0083 255 Gene3D Classic Zinc Finger 80 144 - -
Aed2g0083 255 SUPERFAMILY beta-beta-alpha zinc fingers 99 129 IPR036236 -
Aed2g0083 255 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Aed2g0083 255 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Aed2g0083 255 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 37 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0083 Aed-Chr2 597212 597979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0083 19 255 C2H2 Transcription Factor Family AT5G10970 40.000 3.26e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed2g0083 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0083 - - gmx:102666245 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0083 2 597212 597979 Aed2g0083 2 597212 597979 ECH