Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0078 ATGAAAAAGGATACCAAGTTGTCCACTTCTGTATTTCTCTTGATAATAACTTATCATTGTCAAAGTAAAAATTCTTATGTGGGTTGCTCTGTCCTTGATATTTCCCCCTGCAGTGAAGAGGGTATTGTTGCTGTCGAGCCAGTTCCTGGCGCTGCTGCAGTTGTCATTCCAGGCGAGCCAATGGATATCATGACTGCCTTACAACTTGTGCTCAGAAAATCTCTAGCTTATGGTGGTCTTGCACGAGGCCTTCATGAAGGTGCAAAAGTGATTGAGAAGCATGCTGCACAACTATGTGTTCTAGCAGAAGATTGTGACCAACCTGACTATGTTAAACTTGTTAAGGCTCTTTGTGCAGAGCATAATGTTAGTCTGCTCACAGTTCCGAGTGCAAAGACTCTTGGAGAATGGGCTGGTTTGTGCAAGATTGATTCCGAAGGAAAAGCTAGGAAGGTCACTGGTTGCTCCTGTGTGGTTGTGAAGGATTTCGGTGAGGAGCATGAAGCCTATAATGTTGTTCTTCAGCATGTGAAATCTCAATGA 543 0.4365 MKKDTKLSTSVFLLIITYHCQSKNSYVGCSVLDISPCSEEGIVAVEPVPGAAAVVIPGEPMDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSQ 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0078 180 PANTHER 40S RIBOSOMAL PROTEIN S12 38 180 IPR000530 GO:0003735|GO:0005840|GO:0006412
Aed2g0078 180 Gene3D - 50 180 IPR029064 -
Aed2g0078 180 SUPERFAMILY L30e-like 60 178 IPR029064 -
Aed2g0078 180 PRINTS Ribosomal protein S12E family signature 150 163 IPR000530 GO:0003735|GO:0005840|GO:0006412
Aed2g0078 180 PRINTS Ribosomal protein S12E family signature 125 146 IPR000530 GO:0003735|GO:0005840|GO:0006412
Aed2g0078 180 PRINTS Ribosomal protein S12E family signature 70 83 IPR000530 GO:0003735|GO:0005840|GO:0006412
Aed2g0078 180 PRINTS Ribosomal protein S12E family signature 84 100 IPR000530 GO:0003735|GO:0005840|GO:0006412
Aed2g0078 180 ProSitePatterns Ribosomal protein S12e signature. 66 84 IPR000530 GO:0003735|GO:0005840|GO:0006412
Aed2g0078 180 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 66 159 IPR004038 -
Aed2g0078 180 PANTHER 40S RIBOSOMAL PROTEIN S12 38 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0078 Aed-Chr2 573279 574310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0078 56 180 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 74.400 2.61e-65 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0078 K02951 - gmx:100786733 259.225