Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0054 ATGACATGGACATGGAAATTGGAAGCACCTACTAGTGAGGTTACATACATTATTGATTGGAATTGGAAGAAGCTTCCTCCGGATGAGGCCGGAACATATAATAATAAAAAAAAAGAGAGAGGTGGTAACATGAAGGGCGCGTGGCAGGCGCTGTTTGAGATGGGGATATACCTCAGCACTCCCAAAACAGACAAGGCCTCTGAAGATGGTGAACACGACAAGCTTCGCTTCGGTTTGTCTTCCATGCAGGGCTGGCGTGCTTCCATGGAAGATGCTCATGCAGCTCACCCGTATTTGGACGAGTCTACGTCGTACTTTGGCGTTTATGATGGCCATGGAGGCAAAGCAGTTTCAAAATTCTGTGCCAAGTATCTACACCAGCAGGTGCTTAAGAGTGAAGCTTACTTAGCTGGAGATTTAGGCACATCTTTACAGAAATCTTTTCTCAGAATGGATGAGATGATGCGTGGACAAAGAGGTTGGAGAGAATTAGCAGTCTTGGGGGATAAAATAGAAAAATTGTCTGGTATGCTAGAGGGCTTTATATGGTCTCCCAGGAGTAGTGAAGCCAATGACCGTGTCGATGATTGGGCTTTTGAGGAGGGACCCCATTCTGATTTTACTGGACCAAACTGTGGAAGCACAGCTTGTGTGGCTGTCATCCGAGGAAACAAACTTGTTGTTGCTAATGCTGGAGATTCTAGATGTGTCTTATCAAGGAAAGGCCAGGCACACAATTTGTCTAAGGATCACAAGCCTGAACTTGAGGCTGAGAAAGACAGGATTCTAAAAGCTGGTGGTTTCATCCAAGTTGGACGGGTCAATGGAAGTTTAAACTTGGCTAGAGCAATTGGAGATATGGAATTCAAGCAGAGTAAGTATTTACCTGCCGAAAAGCAGATTGTAACTGCTGATCCGGACATAACTTCAGAGAATAAACTTTCTGCGGTTTGTGAGAAAGTATTTGATAGGTGCTTGGCACCAACAGCTGGTGGTGAGGGATGTGATAACATGACCATGATCTTGATTCAGTTCAAAAAACCTTCCAGCCCAGCTGCATCATCTGTTACGAACCAGCCCCAGTCGTCTGCTCAACCATCTGAAGCTGCTGATAGAAGTTTAGAGACAATAGAATCGAAGTGA 1143 0.4497 MTWTWKLEAPTSEVTYIIDWNWKKLPPDEAGTYNNKKKERGGNMKGAWQALFEMGIYLSTPKTDKASEDGEHDKLRFGLSSMQGWRASMEDAHAAHPYLDESTSYFGVYDGHGGKAVSKFCAKYLHQQVLKSEAYLAGDLGTSLQKSFLRMDEMMRGQRGWRELAVLGDKIEKLSGMLEGFIWSPRSSEANDRVDDWAFEEGPHSDFTGPNCGSTACVAVIRGNKLVVANAGDSRCVLSRKGQAHNLSKDHKPELEAEKDRILKAGGFIQVGRVNGSLNLARAIGDMEFKQSKYLPAEKQIVTADPDITSENKLSAVCEKVFDRCLAPTAGGEGCDNMTMILIQFKKPSSPAASSVTNQPQSSAQPSEAADRSLETIESK 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0054 380 CDD PP2Cc 76 345 IPR001932 -
Aed2g0054 380 Pfam Protein phosphatase 2C 208 311 IPR001932 -
Aed2g0054 380 Pfam Protein phosphatase 2C 76 157 IPR001932 -
Aed2g0054 380 SMART PP2C_4 66 343 IPR001932 -
Aed2g0054 380 MobiDBLite consensus disorder prediction 349 380 - -
Aed2g0054 380 ProSitePatterns PPM-type phosphatase domain signature. 105 113 IPR000222 GO:0043169
Aed2g0054 380 ProSiteProfiles PPM-type phosphatase domain profile. 76 345 IPR001932 -
Aed2g0054 380 Gene3D - 53 346 IPR036457 -
Aed2g0054 380 SUPERFAMILY PP2C-like 56 347 IPR036457 -
Aed2g0054 380 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 310 358 - -
Aed2g0054 380 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 51 309 - -
Aed2g0054 380 MobiDBLite consensus disorder prediction 349 372 - -
Aed2g0054 380 PANTHER PROTEIN PHOSPHATASE 2C 51 309 IPR015655 GO:0004722|GO:0006470
Aed2g0054 380 PANTHER PROTEIN PHOSPHATASE 2C 310 358 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0054 Aed-Chr2 428169 440953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0054 54 349 PP2C-type Phosphatase Gene Family AT2G25070 67.568 1.78e-166 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0054 K17499 - gmx:100776787 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0054 2 428169 440953 Aed2g0054 2 428169 440953 ECH