Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0048 ATGGAGGAGAAGTACGAGAAACTGGAGAAGGTTGGAGAAGGGACGTACGGGAAAGTATACAAGGCTCGGGAGAAGGCGAATGGGAATGTGGTGGCGTTGAAGAAGACGCGTCTAGAAATGGACGAGGAGGGTGTCCCTCCAACCGCCCTACGTGAGGTCTCTCTCCTTCAGCTTCTCTCACAATCCATCTACATCGTCCGTCTCCTATCGGTCGAACACGTTGACAAGATCCCAAAGTCTCAGAAGGGTTCAACGAACCCGATAACAAAGCCGGTACTCTACCTGGTTTTCGAGTACCTGGACACCGATCTGAAGAAATTCATCGACTCCCACCGTAAGGGACCCAACCCCAGACCCCTCCCAACCACACTTGTACAGAGCTTCCTCTTCCAGCTTTGCAAGGGTGTTGCACACTGCCACAGCCACGGCGTCCTCCACCGCGATCTCAAGCCACAGAACCTCCTTCTCGATCAGCCTAAGGGGATTCTTAAGATCGCAGATCTAGGCCTCGGACGCGCCTTCACCGTCCCTCTCAAGAGCTACACTCACGAGATCGTCACTCTCTGGTACCGAGCACCCGAGGTTCTACTTGGCTCAACCCATTACTCCACCGGTGTTGACATCTGGTCTGTTGGCTGCATCTTTGCTGAAATGGTTAGGAAGCAAGCTCTCTTTCCTGGGGATTCTGAGTTCCAACAGCTCATTCACATTTTCAAGATGTTGGGGACTCCAACGGAGGAGCAGTGGCCAGGAGTTACTTCTCTTCGTGACTGGCATGTCTACCCACGCTGGGAACCCCAGTCCTTGGCAAAGAATGTTCCTACCTTAGGACCTCATGGACTCGACCTTCTCCAGAAAATGCTAAAGTATAATCCTTCTGAGAGAATTTCTGCTAAGGCAGCACTTGATCATCCCTACTTTGACAGTCTTGACAGGTCTCAATTTTAG 948 0.5179 MEEKYEKLEKVGEGTYGKVYKAREKANGNVVALKKTRLEMDEEGVPPTALREVSLLQLLSQSIYIVRLLSVEHVDKIPKSQKGSTNPITKPVLYLVFEYLDTDLKKFIDSHRKGPNPRPLPTTLVQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQPKGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTGVDIWSVGCIFAEMVRKQALFPGDSEFQQLIHIFKMLGTPTEEQWPGVTSLRDWHVYPRWEPQSLAKNVPTLGPHGLDLLQKMLKYNPSERISAKAALDHPYFDSLDRSQF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0048 315 PANTHER CELL DIVISION PROTEIN KINASE 4 315 - -
Aed2g0048 315 PANTHER CYCLIN-DEPENDENT KINASE B1-2 4 315 - -
Aed2g0048 315 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Aed2g0048 315 SMART serkin_6 5 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed2g0048 315 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Aed2g0048 315 Gene3D Transferase(Phosphotransferase) domain 1 103 314 - -
Aed2g0048 315 Gene3D Phosphorylase Kinase; domain 1 1 101 - -
Aed2g0048 315 Pfam Protein kinase domain 5 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed2g0048 315 SUPERFAMILY Protein kinase-like (PK-like) 3 310 IPR011009 -
Aed2g0048 315 ProSiteProfiles Protein kinase domain profile. 5 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed2g0048 315 Coils Coil 315 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0048 Aed-Chr2 405310 407019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0048 3 315 Core Cell Cycle Gene Families AT3G54180 80.511 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Aed2g0048 Pkinase 3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0048 K07760 - gmx:100805119 597.816