Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0047 ATGGCGAAGAAATCGCAGAAAAGCCTCAACAAGACTACTGGGAAGCGCACACGCAAAAGCGTCCCAAGAGACACACCTCCACAACGAAGCTCAATCTATAGGGGTGTCACAAGGCATCGATGGACTGGTCGATATGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCACAGAGCAAGAAAGGAAGACAAGGGGCATATGATGATGAAGAAGCCGCGGCACGTGCTTATGACTTGGCAGCATTGAAGTACTGGGGCCAAGATACCATTCTCAATTTTCCATTATCAAATTATGAGGAGAAGCTCAAGGAGATGGAGGGCCAGTCAAAGGAAGAATATATTGGATCCTTGAGAAGGTTCATTTTTACACAATCACTTCTGGAGCTATTGAAATCAAAAAGCAGCGGCTTCTCTCGAGGAGTTTCAAAATACAGAGGCGTAGCAAGACACCACCATAACGGAAGATGGGAAGCTCGAATTGGAAGGGTCTTTGGCAACAAATATCTATACCTTGGAACTTACGCTACACAAGAAGAAGCAGCCGCAGCATATGACAAGGCAGCAATAGAATACAGAGGACTTAACGCCGTTACAAACTTTGACATGAGCCGTTATATGAATTGGCCACGTCCTAAAGCCGAAGAAGAAAATAATATTCCTATTCCTATTCCTAGCAACGAAAATGTAAACACTAATATTGATGCTGAATTTGTTTCCCATCAGCATGAGCTAGGTTCAGCCTCGGGCTCGGGCTCGGGCTCAGGCTCAGGCAGCTGCGACGAAATCACATTCACAGCAGAGAGTAGTGAAGCAAGATCTTCAGAGGAGTCATCAATTAATCCTTTTCGTCGCACATTCCCTGAAGACATTCAAACTATTTTTGAAAGTCAAGAAGATTCAGCCATCTACACTGATAATGATGATATCATTTTTGGTGACTTGGGCTCGTTTGGTGCACCGATTTTTCATTATGAGCTTGATTGA 987 0.4397 MAKKSQKSLNKTTGKRTRKSVPRDTPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQGAYDDEEAAARAYDLAALKYWGQDTILNFPLSNYEEKLKEMEGQSKEEYIGSLRRFIFTQSLLELLKSKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAAAYDKAAIEYRGLNAVTNFDMSRYMNWPRPKAEEENNIPIPIPSNENVNTNIDAEFVSHQHELGSASGSGSGSGSGSCDEITFTAESSEARSSEESSINPFRRTFPEDIQTIFESQEDSAIYTDNDDIIFGDLGSFGAPIFHYELD 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0047 328 CDD AP2 143 204 IPR001471 GO:0003700|GO:0006355
Aed2g0047 328 ProSiteProfiles AP2/ERF domain profile. 32 95 IPR001471 GO:0003700|GO:0006355
Aed2g0047 328 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Aed2g0047 328 PRINTS Ethylene responsive element binding protein signature 77 97 IPR001471 GO:0003700|GO:0006355
Aed2g0047 328 MobiDBLite consensus disorder prediction 1 16 - -
Aed2g0047 328 SUPERFAMILY DNA-binding domain 143 204 IPR016177 GO:0003677
Aed2g0047 328 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 309 - -
Aed2g0047 328 ProSiteProfiles AP2/ERF domain profile. 144 202 IPR001471 GO:0003700|GO:0006355
Aed2g0047 328 Pfam AP2 domain 32 87 IPR001471 GO:0003700|GO:0006355
Aed2g0047 328 Pfam AP2 domain 143 194 IPR001471 GO:0003700|GO:0006355
Aed2g0047 328 MobiDBLite consensus disorder prediction 1 31 - -
Aed2g0047 328 Gene3D AP2/ERF domain 143 204 IPR036955 GO:0003700|GO:0006355
Aed2g0047 328 Gene3D AP2/ERF domain 32 97 IPR036955 GO:0003700|GO:0006355
Aed2g0047 328 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 309 - -
Aed2g0047 328 SUPERFAMILY DNA-binding domain 31 97 IPR016177 GO:0003677
Aed2g0047 328 SMART rav1_2 144 208 IPR001471 GO:0003700|GO:0006355
Aed2g0047 328 SMART rav1_2 32 101 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0047 Aed-Chr2 398235 402050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0047 28 235 AP2-EREBP Transcription Factor Family AT5G57390 59.447 3.13e-83 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Aed2g0047 AP2 1.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0047 K09285 - gmx:100807781 461.07