Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0038 ATGGATGGTATTCATGGGGGTGATTCTCGGATACACATCAGTGATGGACAGCATCCTATACATGTGCCATATGTGCAACAAGAACACGAGCATCATGGACTGCACCATATGAGCAATGGGAATGGGATTGACGATGATCAAAATGATGGTGGTGGTGGAAGTGAGAGTGTAGAAGGTGAAGTCCCCTCCAACCATGGAAATCTCCCTGACAATCATGCTCTAATAATGGATCAAGGGGGAGATTCTGTGGATCAGCTTACGTTGTCTTTTCAGGGCCAGGTTTATGTTTTTGACTCCGTGTCACCAGAAAAGGTTCAAGCTGTACTACTGTTACTGGGAGGCCGTGAAATACCTCCAACTATGCCTGCCATGCCAGTATCTCCTAACCATAATAACCAGGGATTTACTGGTACTCCGCAAAAATTCAGTGTCCCTCAGAGATTAGCTTCATTGATTAGGTTTCGTGAAAAGCGGAAGGAACGAAATTTTGACAAAAAAATTCGGTATACTGTTCGTAAAGAAGTAGCATTAAGGATGCAAAGAAATAAAGGTCAGTTTACATCTTCCAAGTCCAATTGCGATGAATCTGCATCAAATGCCACAAATTGGGGGACGAATGAAAACTGGACAGCGGACAATAATGGATCCCAGCAGCAAGATATTGTGCACTGTGGCATCAGTGAGAAGAGTACACCAATGATGCGACGCGGGCCTGAAGGGCCAAGGACCCTCTGCAATGCTTGTGGTCTTATGTGGGCAAATAAGGGAACCCTGAGGGACCTATCAAGGGCGGCACCCTTATCTGGACCTATCAAGAATGAGGTCGGAAACCATACATTCCTTAAATTTCATGATGATATTAAAAGTTTAGAGGCCAACCAGATAGTCCATAGAGTTGCAGGAGAAGCCAATGATTCGTCATAA 924 0.4459 MDGIHGGDSRIHISDGQHPIHVPYVQQEHEHHGLHHMSNGNGIDDDQNDGGGGSESVEGEVPSNHGNLPDNHALIMDQGGDSVDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREIPPTMPAMPVSPNHNNQGFTGTPQKFSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNCDESASNATNWGTNENWTADNNGSQQQDIVHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSRAAPLSGPIKNEVGNHTFLKFHDDIKSLEANQIVHRVAGEANDSS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0038 307 CDD ZnF_GATA 222 274 IPR000679 GO:0006355|GO:0043565
Aed2g0038 307 ProSiteProfiles GATA-type zinc finger domain profile. 230 274 IPR000679 GO:0006355|GO:0043565
Aed2g0038 307 MobiDBLite consensus disorder prediction 28 71 - -
Aed2g0038 307 ProSiteProfiles Tify domain profile. 79 114 IPR010399 -
Aed2g0038 307 SMART GATA_3 215 268 IPR000679 GO:0006355|GO:0043565
Aed2g0038 307 Gene3D - 221 265 IPR013088 GO:0006355|GO:0008270
Aed2g0038 307 PANTHER GATA TRANSCRIPTION FACTOR 28 5 273 - -
Aed2g0038 307 Pfam tify domain 85 113 IPR010399 -
Aed2g0038 307 Pfam GATA zinc finger 223 257 IPR000679 GO:0006355|GO:0043565
Aed2g0038 307 ProSiteProfiles CCT domain profile. 147 189 IPR010402 GO:0005515
Aed2g0038 307 SMART tify_2 79 114 IPR010399 -
Aed2g0038 307 PANTHER GATA TRANSCRIPTION FACTOR 28 5 273 IPR045280 GO:0006355
Aed2g0038 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 223 267 - -
Aed2g0038 307 Pfam CCT motif 147 189 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0038 Aed-Chr2 356143 360764 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0038 1 277 Tify Gene Family AT1G51600 62.847 1.71e-125 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed2g0038 CCT 8.8e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0038 - - gmx:100812262 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0038 2 356143 360764 Aed2g0038 2 356143 360764 ECH