Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0036 ATGGGTGAAGAAGTGAAGACGGTTGTTCCAGAGTCGGTGTTGAAGAAGCAGAAGAGGGAGGAGGAATGGGCGTTGGCGAAGAAGCAAGAACTTGATGCTGCCAAGAAAAACAGAGCTCAGAGCCGCAAACTCATCTACAACAGAGCTAAGCAGTACTCTAAGGAGTATGATCACCAGGAGAAGGAGTTAATTCGCTTGAAACGCGAGGCCAAGCTGAAAGGTGGGTTCTATGTGGATCCAGAGGCTAAGCTCTTGTTTATTATTCGCATTCGTGGTATTAATGCCATGGACCCCAAATCAAGGAAGATCCTGCAGTTGTTGCGATTGAGACAGATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTGCATAGAGTTGAGCCGTATGTGACTTATGGATACCCAAATCTCAAGAGTGTGAGAGAACTTATTTACAAGAGAGGTTATGGAAAGCTAAACAAGCAGAGAACTGCTCTAACTGACAACTCCATCATTGAGCAGGCTCTGGGCAAATATGGAATTATATCCACTGAAGATCTGATCCATGAGATCATCACTGTTGGACCTCACTTTAAGGAGGCTAACAACTTCCTCTGGCCAATAAAGCTGAAGGCTCCTTTGGGTGGCTTAAAGAAGAAGAGAAACCACTATGTCGAGGGAGGTGATGCTGGTAACCGGGAGAATTACATCAATGAGCTAATCAGGAGAATGAATTGA 732 0.444 MGEEVKTVVPESVLKKQKREEEWALAKKQELDAAKKNRAQSRKLIYNRAKQYSKEYDHQEKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRTALTDNSIIEQALGKYGIISTEDLIHEIITVGPHFKEANNFLWPIKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0036 243 SUPERFAMILY Ribosomal protein L30p/L7e 84 243 IPR036919 -
Aed2g0036 243 Coils Coil 49 69 - -
Aed2g0036 243 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 5 243 - -
Aed2g0036 243 Pfam Ribosomal protein L30p/L7e 85 135 IPR016082 -
Aed2g0036 243 TIGRFAM uL30_euk: 60S ribosomal protein uL30 10 243 IPR005998 GO:0000463|GO:0003735|GO:0022625
Aed2g0036 243 PANTHER 60S RIBOSOMAL PROTEIN L7 5 243 IPR039699 -
Aed2g0036 243 ProSitePatterns Ribosomal protein L30 signature. 103 135 IPR018038 -
Aed2g0036 243 Pfam Ribosomal L30 N-terminal domain 9 80 IPR012988 -
Aed2g0036 243 CDD Ribosomal_L7_archeal_euk 84 243 IPR035808 -
Aed2g0036 243 Gene3D - 84 187 IPR036919 -
Aed2g0036 243 Gene3D - 188 243 IPR036919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0036 Aed-Chr2 340702 342636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0036 4 243 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 86.250 1.82e-156 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0036 K02937 - gmx:100813342 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0036 2 340702 342636 Aed2g0036 2 340702 342636 ECH