Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0020 ATGAAGCTCACAGTGAAGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAGCCTTCCGACACTGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGCAAAGATAATTACCCATGTGGCCAGCAATTGTTGATTCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAGTAGAGAACAAAGTCTCTGAAGATGGCTTTCTTGTTGTTATGCTTAGTAAGAGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGCCTGCCAGCAATCCTGCTACGACTGTATCAACATCAAATTCCACCCCTGCTTCTGGTGCTCCAGTGCAAACACATGTGTCTGCAGATACCTATGGTCAGGCTGCTTCGAATTTAATTGCTGGCAGTAATCTTGAGCAGACTATTCAACAAATTATGGACATGGGTGGTGGCAATTGGGACAGAGATACAGTTAGTCGTGCTCTTCGGGCAGCTTATAATAACCCAGAGCGTGCTATAGATTACTTGTATTCTGGAATCCCTGAAGCAGCTGAAGTTGCTGTGCCAGTTCCTCAAACAGCTGGGATTTCTTCTGGAGCAGTTACTGTAGGACCTAATTCATCTCCCTTAAATATGTTTCCACAGTTGAAACTCTCCCAGGAGACAATTGCAAGTACTGGTGCCGGACTTGGATCGCTGGACTTCCTTAGAAATAATCCCCAGTTTCAAGCATTGCGTTCAATGGTGCAATCGAATCCACAAATCCTACAGCCTGTGCTTCAGGAACTTGGTAAGCAGAATCCGGGTCTTTTAGGACTGATTCAAGAGCATCATGGGGAGTTTCTCCAGTTAATAAATGAACCTGTTGAGGGTTCTGAAGGAGATATATTTGAGCAGCCTGAGCAGGACATGCCTCATGCGATCAATGTGACTCCAGCTGAGCAGGAGGCAATTGGAAGGCTTGAGGCAATGGGATTTGATAGAGCCTCGGTGATAGAGGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTATTTATTGGAGAATGCTGGAGACTTTGAGGATTAA 1062 0.4454 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVENKVSEDGFLVVMLSKSKTSGSAAASSVQPASNPATTVSTSNSTPASGAPVQTHVSADTYGQAASNLIAGSNLEQTIQQIMDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGISSGAVTVGPNSSPLNMFPQLKLSQETIASTGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPGLLGLIQEHHGEFLQLINEPVEGSEGDIFEQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0020 353 SUPERFAMILY Ubiquitin-like 1 87 IPR029071 -
Aed2g0020 353 Gene3D - 1 80 - -
Aed2g0020 353 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 352 - -
Aed2g0020 353 TIGRFAM rad23: UV excision repair protein Rad23 1 352 IPR004806 GO:0006289
Aed2g0020 353 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 307 347 IPR015940 -
Aed2g0020 353 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Aed2g0020 353 CDD UBA1_Rad23_plant 127 176 - -
Aed2g0020 353 Pfam UBA/TS-N domain 133 171 IPR015940 -
Aed2g0020 353 Pfam UBA/TS-N domain 309 344 IPR015940 -
Aed2g0020 353 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Aed2g0020 353 Gene3D - 126 176 - -
Aed2g0020 353 PRINTS DNA repair protein Rad23 signature 320 334 IPR004806 GO:0006289
Aed2g0020 353 PRINTS DNA repair protein Rad23 signature 254 276 IPR004806 GO:0006289
Aed2g0020 353 PRINTS DNA repair protein Rad23 signature 335 350 IPR004806 GO:0006289
Aed2g0020 353 PRINTS DNA repair protein Rad23 signature 303 319 IPR004806 GO:0006289
Aed2g0020 353 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 1 352 - -
Aed2g0020 353 SUPERFAMILY XPC-binding domain 225 291 IPR036353 GO:0003684|GO:0006289|GO:0043161
Aed2g0020 353 MobiDBLite consensus disorder prediction 82 112 - -
Aed2g0020 353 Gene3D - 300 348 - -
Aed2g0020 353 SUPERFAMILY UBA-like 288 350 IPR009060 GO:0005515
Aed2g0020 353 SMART ubq_7 1 75 IPR000626 GO:0005515
Aed2g0020 353 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 131 174 IPR015940 -
Aed2g0020 353 Pfam XPC-binding domain 228 283 IPR015360 GO:0003684|GO:0006289|GO:0043161
Aed2g0020 353 SMART uba_6 133 173 IPR015940 -
Aed2g0020 353 SMART uba_6 309 346 IPR015940 -
Aed2g0020 353 CDD Ubl_Rad23 1 74 - -
Aed2g0020 353 SUPERFAMILY UBA-like 130 181 IPR009060 GO:0005515
Aed2g0020 353 Gene3D - 218 284 IPR036353 GO:0003684|GO:0006289|GO:0043161
Aed2g0020 353 SMART CBM 226 269 IPR006636 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0020 Aed-Chr2 223411 229563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0020 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 37.838 9.28e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0020 K10839 - gmx:100819019 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0020 2 223411 229563 Aed2g0020 2 223411 229563 ECH
Aed1g1569 1 13913389 13918216 Aed2g0020 2 223411 229563 PCT