Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g3154 ATGATTGGCAATGGAGTGTTCAATCTCTGCACATGCCTCCATTTCCCAGAGAGACTGCTATTCCGAGCACCTCTGCGTTCGTTCAGTTTCCAGCGGCAGTTTCTGGTTACTGCATCCAAAAAGAAGAAGAAAGAGAAGGTCATTGTGATTTCTGGACCCACCGGTTCCGGCAAGAGCCGCCTCGCATTGGAACTTGCAAAGCGCCTCAACGGCGAAATCATTAGTGCTGACTCCGTTCAGGTGTATCGGGGGCTTGATGTTGGATCTGCAAAGCCTTCGCCTAATGAAAGAAAGGAGGTACCGCATCATCTGGTTGACATACTACATCCATCTGAAGACTATTCTGTTGGGCAGTTTTTTGAGGATGCGAGACAAGCTACAAGATGTATTCTTGACAATGGCCGTGTTCCCATAGTTGTTGGAGGCACTGGATTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTGCCTAAAGCCTCTCAAGAGATTATATCTGAAGCATATCAAGAGTTAGCCGAACTGCAGAGTAATGGAGACTGGGATACAGCTGTGCAAATGTTGTCTAGTGGATCACCTCCTTCTGCATTTCGGGTACCATATGATTCTTTCAGGGAACATGGTGAATGTAGTGTTGCTGATGGTTCTGAGTCGTCTAATATGAATACTTATGGTGATGCAATGGAAGAAACCAACTCATCTGAGTTAGACTATGAGTTTATGTGTTTTTTCCTTTCTAGCCACAGACTTGACCTGTATAAATCACTTGATTATCGGTGTGAAGATATGCTATTAGGAAGGGATGGGATTTTGTCTGAGGCTCAGTGGCTTCTTGATAAGGGTCTTCATCCAAACTCCAATTCTGCAACAAAAGCAATTGGTTACAGACAAGCCATGGAGTACTTACAAAGATGCAGAGAGCAAGGGGGCCAAAGTTCTATTGGAGAATTTTACAAATTCTTGTTTGAATTTCAAAAAGCATCCCGGAATTTTGCAAAAAGGCAGTTGACATGGTTTCGTAATGAAAATATATACCAGTGGCTTGATGCTTCTAAACCTTTGGAAACCATTCTCGACTTCATTCATGGTGCATACCATGATTGGAATGGAAGTATTCTTGTGCCTGAACACTTAAGAATGTCCAGAGATATTTCTAATCACCGACAAGCTGCACAACTCAAGTCTTACCGCACCAGAAATAGGTACTTTTTATTTTTATTTTTCAGGGCATTTTCTGATCAGGGAAGATTGTTCTACTATTCTGGACTGGATAAGCAAGACTCAAAGTCAAAGGTGAAGATATGGATATTTTTTTTCTTTAGGCATTCCCTTGAACTTGCCTTAAACTTGAAATTATAA 1359 0.4172 MIGNGVFNLCTCLHFPERLLFRAPLRSFSFQRQFLVTASKKKKKEKVIVISGPTGSGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSPNERKEVPHHLVDILHPSEDYSVGQFFEDARQATRCILDNGRVPIVVGGTGLYLRWFIYGKPDVPKASQEIISEAYQELAELQSNGDWDTAVQMLSSGSPPSAFRVPYDSFREHGECSVADGSESSNMNTYGDAMEETNSSELDYEFMCFFLSSHRLDLYKSLDYRCEDMLLGRDGILSEAQWLLDKGLHPNSNSATKAIGYRQAMEYLQRCREQGGQSSIGEFYKFLFEFQKASRNFAKRQLTWFRNENIYQWLDASKPLETILDFIHGAYHDWNGSILVPEHLRMSRDISNHRQAAQLKSYRTRNRYFLFLFFRAFSDQGRLFYYSGLDKQDSKSKVKIWIFFFFRHSLELALNLKL 452
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Aed1g3154 452 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 9 36 382 - -
Aed1g3154 452 Pfam IPP transferase 80 342 - -
Aed1g3154 452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 175 IPR027417 -
Aed1g3154 452 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 36 382 IPR039657 -
Aed1g3154 452 Gene3D - 44 403 IPR027417 -
Aed1g3154 452 TIGRFAM miaA: tRNA dimethylallyltransferase 47 352 IPR018022 GO:0008033
Aed1g3154 452 Hamap tRNA dimethylallyltransferase [miaA]. 47 359 IPR018022 GO:0008033
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Aed1g3154 Aed-Chr1 30362265 30370150 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g3154 50 303 C2H2 Transcription Factor Family AT2G27760 26.866 1.76e-18 85.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g3154 K00791 - gmx:100808814 727.628