Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g3151 ATGGAAGACAATGGTTGCATTCCTGATGTTATAACTTTTGAAATAATTATTCATGCTCTATTTGTAAAGGATGAGACCGATAGGGCAGAGAAACTTCTTCATGAAATGATCACTAGAGGCTTAGTTGTTGGTTATGCAGTGGCCTCATTGCTGTTGATTTTGGAGATAGATTACAAACAATTTATCTATGTTCATCCCTACATTGCTGTTTGGCTGGCTGATGCGCCTAAGTCCGTCTTAGAAGTAATGGAAGATGTTACCAAAAGTGTTGTCTTTGAATTACATCCATATTACAGAAATGTACACCAAAAGCTTTATCTACGGTTAAAGTGGCAAAACATGAGACATGGCGTAGAGAGGCTATCCGGAACAGGTTGA 378 0.3836 MEDNGCIPDVITFEIIIHALFVKDETDRAEKLLHEMITRGLVVGYAVASLLLILEIDYKQFIYVHPYIAVWLADAPKSVLEVMEDVTKSVVFELHPYYRNVHQKLYLRLKWQNMRHGVERLSGTG 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g3151 125 TIGRFAM PPR: pentatricopeptide repeat domain 11 42 IPR002885 -
Aed1g3151 125 Gene3D - 46 111 - -
Aed1g3151 125 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 53 109 IPR031327 GO:0003677|GO:0005524|GO:0032508
Aed1g3151 125 Pfam PPR repeat 4 36 IPR002885 -
Aed1g3151 125 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Aed1g3151 125 PANTHER DNA HELICASE 53 109 - -
Aed1g3151 125 Gene3D Tetratricopeptide repeat domain 1 42 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g3151 Aed-Chr1 30220949 30223852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g3151 47 109 Core DNA Replication Machinery Family AT1G44900 60.317 3.04e-23 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g3151 K02540 - gmx:100799441 106.686