Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g3085 ATGAATGGGGAGGAAAGAGCTAAATTTCTTGCCCGTACTCTTAACACATGTGCTAAGTATATTGAATCAGGGATCTTCAAGAATGCAGATACAGCACTAGACTATATTGCTCACCTTGCCTCACCTTATGGTGATTCAATGCAAAGGGTATCCACCTATATCAGTAAGGGTCTAGCTTGCCAAGTCCTGAAAAATTTGCATGGTGTATCCAATGCTCTCAATTTCCCAGTGTCAACCTTAGAAGAAAAACTTGTCAAGAAGCTATTCAATGATCTGTATCCGTTTTTAAAGATTGCATATGTGATCACAAGTCATGCTATTGCTGAAGCTATGGAAGGGGAAGAAGTGATCCACGTGGTTGATCTTGGCGCATCGGATGCTTCTCAGTGGATTTATCTCATGCAGAGATTAAAAGGAAGCGGAAAGAATCCACCGGTTCTGAAAATCACAGGCGTACATGAGAAGAAGGAGATTTTAGATGAAGTGGCCACTGACTTGATAGTAGAAGCTAAAAATTTGAAGTTCCGTCTCCAATTCAATGCTATTGTAAGCACTTTGGAGAATCTTGACCTTCTAGATTTTCCTGTGAAGGAAGGAGAAGCTCTTGCAATTTGCTCAGTACTTCAGCTGCACACTCTTCTGGCCACTGATGATGCAATGGTTTGCATCCGGGGCTCGCTACCGGTGGAACCATTGCATCAGATAACATTTGCTGAGATGCTTGGGAAACGAAAGACCAACAAAGTTTCTGAATCATCATTGTTACAGCTTCCTCTATGTTCTACTTCAACCAAAATAATGCAATCTCTAAATGGCCTGTGGAAACTCAAACCTAGAGTGATGGTGATCACTGAACAAGAATCAGATGTTAATGGCTATTCTTTGACAGAAAGGGTTGACAGGGCATTGGACTTTTATGGTGCATTGTTCAATTGCTTGGAATCAACTGTTTCAAATACAAAAGTGGAGAGAATCATAATGGAGAGGACTCTATTAGGGGAAGAAATAAAGAACATTGTTGCATGTGAAGGAGTTGATAGAAAGGAGAGGCATGAGAAATTTGAGACTTGGGTTCGAAGGCTAGAAATGGCTGGGTTTGGGAAGGGACATATTAGCTATCATGGGATGATGGAAGCAATAAATCAGTTGCATGCTTATGGAAATGGATATAAGCTTTGTCTGGATAATAATTGTTTGTTTGTCTGCTGGAATGATAAGCCACTCTTTTCTGTATCAACTTGGAAGATTTAG 1251 0.4053 MNGEERAKFLARTLNTCAKYIESGIFKNADTALDYIAHLASPYGDSMQRVSTYISKGLACQVLKNLHGVSNALNFPVSTLEEKLVKKLFNDLYPFLKIAYVITSHAIAEAMEGEEVIHVVDLGASDASQWIYLMQRLKGSGKNPPVLKITGVHEKKEILDEVATDLIVEAKNLKFRLQFNAIVSTLENLDLLDFPVKEGEALAICSVLQLHTLLATDDAMVCIRGSLPVEPLHQITFAEMLGKRKTNKVSESSLLQLPLCSTSTKIMQSLNGLWKLKPRVMVITEQESDVNGYSLTERVDRALDFYGALFNCLESTVSNTKVERIIMERTLLGEEIKNIVACEGVDRKERHEKFETWVRRLEMAGFGKGHISYHGMMEAINQLHAYGNGYKLCLDNNCLFVCWNDKPLFSVSTWKI 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g3085 416 Pfam GRAS domain family 11 415 IPR005202 -
Aed1g3085 416 ProSiteProfiles GRAS family profile. 1 415 IPR005202 -
Aed1g3085 416 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 3 415 - -
Aed1g3085 416 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 3 415 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g3085 Aed-Chr1 28291312 28292562 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g3085 4 415 GRAS Transcription Factor Family AT1G50420 42.069 2.31e-118 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aed1g3085 GRAS 5.8e-99 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g3085 - - hbr:110638590 400.208