Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g3082 ATGAAGATAGGAGATGCTCTTGCAATCACTTCGTTGACATGGCTGGGTGGATCTCACCAGCCACGGCAACGCACCTCATCTAAGATGGGGATCTTTCTCAACGCCATGGGAAAACTCCAACCAAAACTGGTGGTGATTACAAAACAAGAATCAAATTTGAATGGGTCTAATTTGATGGAGAGAGTTTACAGTGCATTGTACTTTTACAGTGCATTGTTTGACTTCTTGGACTCTACTGTCATGAGAACATCAGTAGAGAGGCAGAAGCTAGAGAGCATGTTTCTCGAAGAGCAAATTAAAAACATCATTGCTTACAAGGGTTTGATAGAAAGGAAAGACACAAAAAACTTGAGAAATGGATTCGGAGGCTTGAGATGGATGGTGCTTTTGAGATACAATGGGAGGATAAAAGCAAAGAATATGTTGAAGAGATATAGTAGTAAATACAATTTTCGAGAAGAGAACGATTGTTTACTTGTTTGCTATAGTGATAGACCATTGTTTTTTGCATCAGCTTGGAGTTTTAGGAGATAA 534 0.3914 MKIGDALAITSLTWLGGSHQPRQRTSSKMGIFLNAMGKLQPKLVVITKQESNLNGSNLMERVYSALYFYSALFDFLDSTVMRTSVERQKLESMFLEEQIKNIIAYKGLIERKDTKNLRNGFGGLRWMVLLRYNGRIKAKNMLKRYSSKYNFREENDCLLVCYSDRPLFFASAWSFRR 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g3082 177 Pfam GRAS domain family 4 173 IPR005202 -
Aed1g3082 177 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 16 175 IPR005202 -
Aed1g3082 177 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 16 175 - -
Aed1g3082 177 ProSiteProfiles GRAS family profile. 1 174 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g3082 Aed-Chr1 28173139 28173809 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g3082 32 177 GRAS Transcription Factor Family AT1G50420 41.290 3.68e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aed1g3082 GRAS 9.8e-31 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g3082 - - gmx:106798410 206.068