Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g3081 ATGCAAAATGTATTGCATCTGAAAGATTCAAGAATGCAGATATTGACCCTGAGTACATATCTTAAATTTCATCTACTGATGGAAATGCAGTGGAAAGAATGGCCACTTATTTTAGTGCAACACTTGGTGTGTATAAGTCTCTCAATCCATAAAATAACACCACTCTCATCAAAAGATATCCTTGTTCATAAATACTTCTACAAAATGTGTCCATTTCTAAAATTCTCATACCTAATCACACACCAAGCCATTGTGGAGGCCCTGGAGTTAGAAAAGGTGGTTCATATCATTGATCTCCATTGTTGTGAGCTAGCTTAA 318 0.3585 MQNVLHLKDSRMQILTLSTYLKFHLLMEMQWKEWPLILVQHLVCISLSIHKITPLSSKDILVHKYFYKMCPFLKFSYLITHQAIVEALELEKVVHIIDLHCCELA 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g3081 105 Pfam GRAS domain family 56 100 IPR005202 -
Aed1g3081 105 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 48 103 - -
Aed1g3081 105 ProSiteProfiles GRAS family profile. 1 105 IPR005202 -
Aed1g3081 105 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 48 103 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g3081 Aed-Chr1 28172609 28172953 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g3081 57 105 GRAS Transcription Factor Family AT1G50420 53.061 7.35e-11 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aed1g3081 GRAS 2.4e-12 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g3081 - - gmx:100779726 93.9745