Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g3079 ATGCATATAAAACAACTTATCCACATTTTCCTCTCAATCCCAGGAAGCATCAAGAATGCAGATATTGGCCTTGAGTACATATCTCATATTTCATCTCCTGATGGCAATGCAGTGGAAAGAATGGTGACTTACTTCAGTGAAGCACTTGGTTATAGGATAATAAAAAACTTGCCAGGTGTGTATAAGTCTCTCAATCCATCAAAAACATCATTGTCGTCAGAAGACATCCTTGTTCATAAATACTTCTATGAACTGTGTCCATTTCTGAAGTTCTCATACCTGATCACAAACCAAGCAATTGTGGAGGCCATGGAGTTAGAAAAGGTGGTTCATATCATTGATCTCCATTGTTGTGAGCCAGCTCAATGGATAGATCTTTTATTAACTTTCAAAAACCGCCAGGGAGGCCCACCCCATCTAAAAATCACAGGGATTCATGAGAAGAAAGAAGTTTTAGATCAAATGAACTTTCATTTGACAACTGAAGCCGGGAAATTGGATTTCCCTTTGCAGTTCTATCCAGTTGTGAGCAAATTGGAAGATGTTGACTTTGAGAAGTTGCCTGTGAAGATAGGAGATGCTCTTGCAATCACTTCTGTTCTTCAGATGCATTCTCTTCTTGCCACTCATGATGATGATGATATGGCTGGGAGGATTTCACCAGCCGGGACAACGTCAATGAATCTGCAGAGAGCATTGCATTTGGGCCAAAGGACTTTTGCGGAGTGGCTTGAGAGAGATATGATCAATGCATATATCTTGAGTCCTGATTCTGCATTGTCACCTCTTTCATTAGGCGCCTCGCCTAAGATGGGAATCTTTCTCAACGCCATGCGAAAACTCCAACCAAAACTGGTGGTGATTACAGAACAAGAATCAAATCTGAATGGATCCAATTTGATGGAGAGAGTTGATAGAGCATTGTACTTTTATAGTGCATTGTTTGACTGCTTGGACTCTACTGTCATGAGAACATCTATAGAGAGACAGAAACTTGAGAGCATGCTTCTCGGAGAGCAGATTAAAAACATCATTGCTTGCGAGGGCGTCGATAGAAAAGAGAGACACGAAAAACTTGAGAAATGGATTCGGAGGCTTGAGATGGCTGGTTTTATGAAAGTTCCTTTGAGCTACAATGGGAGGATAGAAGCAAAGAATCTATTGCAGAGATATAGTAGTAAATACAAGTTTCAAGAAGAGAATGATTGTTTACTTGTTTGCTGGAGTGATAGACCATTGTTTTCTGTGTCAGCTTGGAGTTTTAGGAGATGA 1272 0.4041 MHIKQLIHIFLSIPGSIKNADIGLEYISHISSPDGNAVERMVTYFSEALGYRIIKNLPGVYKSLNPSKTSLSSEDILVHKYFYELCPFLKFSYLITNQAIVEAMELEKVVHIIDLHCCEPAQWIDLLLTFKNRQGGPPHLKITGIHEKKEVLDQMNFHLTTEAGKLDFPLQFYPVVSKLEDVDFEKLPVKIGDALAITSVLQMHSLLATHDDDDMAGRISPAGTTSMNLQRALHLGQRTFAEWLERDMINAYILSPDSALSPLSLGASPKMGIFLNAMRKLQPKLVVITEQESNLNGSNLMERVDRALYFYSALFDCLDSTVMRTSIERQKLESMLLGEQIKNIIACEGVDRKERHEKLEKWIRRLEMAGFMKVPLSYNGRIEAKNLLQRYSSKYKFQEENDCLLVCWSDRPLFSVSAWSFRR 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g3079 423 ProSiteProfiles GRAS family profile. 1 420 IPR005202 -
Aed1g3079 423 Coils Coil 381 401 - -
Aed1g3079 423 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 14 421 IPR005202 -
Aed1g3079 423 Pfam GRAS domain family 16 419 IPR005202 -
Aed1g3079 423 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 14 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g3079 Aed-Chr1 28087346 28091680 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g3079 6 423 GRAS Transcription Factor Family AT1G50420 50.926 1.64e-145 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aed1g3079 GRAS 9.4e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g3079 - - gmx:106798410 760.755