Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g3075 ATGGCATATTTCCTTACTATTATGGTGGGTGATCCTAACTATTTTATTCGAGGAAGTTCATCAGAAAATGGCCATAGATTTCCCCATCCTCCTCCTTCTCCACAACACTTTGATAATCAAACACACCATGTGCAAGAGATCAGAGGTGACTCCATCATCTTTTATCCTCCAGTAGCTGCTCCTTTGTATAGAGTTCCGACAAATCCTTCAATCCTCGTACAAGATGCTATTGACATGGGAGCTATGCACGTTGGCCCTGCACCATATGTAGGTGCACGTATACACTGGAGAACTCCTAGACCTCAAAATCTTCATCGAGGCAGCATGCATCGGAGAACTCTTAGACCTCAATCTGATACTGATCTTCTTGCTTTAGGTGAGCAGATTGGCGATGTAAAATCGGGTTTGTCAGAAAACATAATTACAAGTCAAATGAAGACAAAAGCTTGTTTACTACCTACTAGTGCTACTAACCCGGAGGAACCTTGCGTAATATGTCAGATTGGGGTTCTTCATTGCCGACACGAATATCACGTAGACTGTCTAAGCAAATGGTTACTCGAAAAGAATGTTTGCCCCTTATGCAAATCAGAAGCATTGACTAGGAGAGAAGAATTATTATTTTTGTTACATAGATTTAAGACTTCCATTACTTTCTTAAGGACTATTTTATTCACTCTGGTTTGTATATTAGGATTAAATTGCATCAACAAACAATGA 720 0.3972 MAYFLTIMVGDPNYFIRGSSSENGHRFPHPPPSPQHFDNQTHHVQEIRGDSIIFYPPVAAPLYRVPTNPSILVQDAIDMGAMHVGPAPYVGARIHWRTPRPQNLHRGSMHRRTLRPQSDTDLLALGEQIGDVKSGLSENIITSQMKTKACLLPTSATNPEEPCVICQIGVLHCRHEYHVDCLSKWLLEKNVCPLCKSEALTRREELLFLLHRFKTSITFLRTILFTLVCILGLNCINKQ 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g3075 239 PANTHER OS04G0185500 PROTEIN 121 201 - -
Aed1g3075 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 121 201 IPR045191 GO:0061630
Aed1g3075 239 SUPERFAMILY RING/U-box 158 201 - -
Aed1g3075 239 Pfam RING-H2 zinc finger domain 155 196 IPR024766 GO:0008270
Aed1g3075 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 203 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g3075 Aed-Chr1 27853542 27854955 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g3075 121 200 C3H Transcription Factor Family AT2G15530 46.739 4.25e-19 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g3075 K19041 - gmx:100820042 196.052