Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g3071 ATGCATAGAATACTATCGACGCCAGCGTCGAAGTTCCGCCAGTTTCAGTCGCGACCGAAGACAGCGACATCGGCAGAGGAGGAGCACGCGTTCCAGATCCTATGGCGGTACCAGATCCTGGACCCGGACAGCGACATCGTGGCCTATTGGAACCGCGTGTTCCTTGTGACGAGCCTCCTCGCCCTCTTCGTCGACCCTCTCTACTTCTTCCTCCCCACCGTCGGCGGCCCCGCCTGCCTCCAGGCAGACCCCAAACTCAGCATCCTCGTCACCATCATCCGAACCTTCTCCGACCTCTTCTACGTCCTCCACATGGTCATGAAGTTCCGCACCGCCTTCGTCGCCCCCAACTCTCGAATCTTCGGCCGCGGTGACCTCGTCACGGACTCCCGCGAAATCGCCATGCGCTACTTGAAGTCTGATTTCGTCATCGATCTCGCGGCCACCATCCCTCTCCCCCAGATAGTGATTTGGTTGGTGATTCCAGCGAGTAGAAATGCAAGAACTGATCACGCCAACAACACTCTTGCCCTTTTTGTTCTTATTCAGTATGTTCCTAGGTTGTTTCTTATCTTTCCTTTGAACCAGCGTATTCAGAAAACCACTGGTGTTATCGCCAAGACACCCTGGATTGGAGCTGCATACAATCTTGTTCTCTACATGCTAGCTAGCCATGTTACAGGAGCGACTTGGTATCTATCGTCGATCGGGAGGCAATTTAACTGCTGGAAAACGCAGTGTGAAATAGAGAACAAATCACACGCTCTGTCTTGCTTTTCCAGTTATCTTGATTGCAATAGTTTGAACCTCCCTGATAGGCAATACTGGCTAAACATCACCCGCGTACTCAGCAGATGCGACGCAAAGAGCAAGATCAACATCAAATATAGGTTTGGGATGTTCGCAGATGCTTTCATCAATGATGTTGTCACTTCCAGTTTTAAGGAGAGATACTTCTATTGTCTTTGGTGGGGTTTGAGAAATTTAAGCTCATATGGACAGAATTTGGACACCACCACATATCTCCCAGAGACATTCTTTTGCATCATCTTATGCATTGTTGGATTGGTTCTCTTTTCACTTTTGATTGGTCAAATGCAGACGTACTTGGCATCAATGTCAGTTAGACTTGAAGAATGGAGAATTCGGAAAAAAGACACTGAAGAGTGGATGAGGCATCGCCAGTTACCACAAGATTTGCAGGAACGTGTCCGTCGTTTTGTTCAATATAAATGGCTTGCAACAAGAGGAGTTAATGAAGAATCCATACTGCTTTCGTTACCTTTGGATCTTCGTCGCGAAATTCAACATCACTTGTGTCTTTCTCTTGTGAGGCGTGTGCCGTTCTTCTCACAAATGGATGATCAACTTCTTGATGCAATTTGCGAACGCCTTGTGTCATCACTAAGCACTGAAGACACCTACATATTCCGAGAGGGTGATCCAGTGGATGAGATGCTGTTCATCATTAGAGGGCAATTGGAGAGCAACACAACCAATGGAGGAAGGTCTGGATTCTTTAACTCCATCACACTCCGGCCTGGTGACTTTTGTGGAGAGGAACTGTTGACATGGGCCTTAATGCCAAACTCAACCCTCAACCTTCCTTCTTCTACACGCACTGTCAAAGCACTAACTGAAGTTGAAGCATTTGCACTACAAGCAGAGGATCTGAAGTTTGTGGCGAGCCAGTTCAAGCGCCTTCACAGCAAGAAACTTCAACATGCATTTAGGTACTATTCCCATCAATGGAGGACATGGGCTTCATGCTTCATACAAGCTGCATGGAGAAGGTTTCAGAAGAGAAAGGCAACAAGGGAGTTGTCCCTCAAAGAGCGTCTCTACTACCTTGATATGCATGATGATGAACATGGAAGTGGACATTATGATGCAGATTATGATGATGAGATCATCAGAGAGGATTCCATCTCCTCTTCCTCCTCCGGCCTTAGTGGGAGCATGAAAAAGGTTCAGAAAAAGATTCAGAATTTAGGTGCAACTGTTTTGGCTTCAAGGTTTGCTGCCAATACTAGGAGAAGCCACCACCACCGTAAGTTACAAGATCCTGTGCCCCAATTGTTCAAGCCACTTGAACCTGATTTTTCTGTAGACCAATGA 2118 0.4717 MHRILSTPASKFRQFQSRPKTATSAEEEHAFQILWRYQILDPDSDIVAYWNRVFLVTSLLALFVDPLYFFLPTVGGPACLQADPKLSILVTIIRTFSDLFYVLHMVMKFRTAFVAPNSRIFGRGDLVTDSREIAMRYLKSDFVIDLAATIPLPQIVIWLVIPASRNARTDHANNTLALFVLIQYVPRLFLIFPLNQRIQKTTGVIAKTPWIGAAYNLVLYMLASHVTGATWYLSSIGRQFNCWKTQCEIENKSHALSCFSSYLDCNSLNLPDRQYWLNITRVLSRCDAKSKINIKYRFGMFADAFINDVVTSSFKERYFYCLWWGLRNLSSYGQNLDTTTYLPETFFCIILCIVGLVLFSLLIGQMQTYLASMSVRLEEWRIRKKDTEEWMRHRQLPQDLQERVRRFVQYKWLATRGVNEESILLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLSTEDTYIFREGDPVDEMLFIIRGQLESNTTNGGRSGFFNSITLRPGDFCGEELLTWALMPNSTLNLPSSTRTVKALTEVEAFALQAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWASCFIQAAWRRFQKRKATRELSLKERLYYLDMHDDEHGSGHYDADYDDEIIREDSISSSSSGLSGSMKKVQKKIQNLGATVLASRFAANTRRSHHHRKLQDPVPQLFKPLEPDFSVDQ 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g3071 705 ProSiteProfiles cAMP/cGMP binding motif profile. 449 579 IPR000595 -
Aed1g3071 705 Gene3D Jelly Rolls 447 567 IPR014710 -
Aed1g3071 705 SMART cnmp_10 449 580 IPR000595 -
Aed1g3071 705 Pfam Ion transport protein 49 376 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Aed1g3071 705 MobiDBLite consensus disorder prediction 676 705 - -
Aed1g3071 705 SUPERFAMILY cAMP-binding domain-like 379 574 IPR018490 -
Aed1g3071 705 Pfam Cyclic nucleotide-binding domain 473 560 IPR000595 -
Aed1g3071 705 MobiDBLite consensus disorder prediction 1 23 - -
Aed1g3071 705 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 27 704 - -
Aed1g3071 705 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 18 27 704 - -
Aed1g3071 705 SUPERFAMILY Voltage-gated potassium channels 41 371 - -
Aed1g3071 705 Gene3D Helix hairpin bin 373 440 - -
Aed1g3071 705 CDD CAP_ED 449 580 IPR000595 -
Aed1g3071 705 Gene3D - 56 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g3071 Aed-Chr1 27729183 27736353 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g3071 19 705 Ion Channels AT5G14870 66.761 0.0 977
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g3071 K05391 - gmx:100802812 1246.49