Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed1g3063 | ATGCTGTGTCTACTTGCGAGTCACTCTCTTCTTACTTGTTCCACTCGCACCAATGAAGATGATCACACTACTCAAAGGCTTTACCAGCTTTCACTTGCTGGTAGATATTTTGTCAAAGATGAGCACAAGGGCTCTTTAGCTTTCCTATCCACTTTTCTTAGTCACCAAACAATCGTGGATGTCTTCCTCAATTTTAAGGAGATACTTCTAGACTTTGACAAGGGCGTATTCGAGAAAGTTCATGGAGTGCCTATTTATGAAGGCATAAAATCAGATCCGACATTGAGTAAGGTTTTTAATGAAGCAATGGCTAATCTGGGCACAATCGAGATGAATAGGATACTTGAAATATATACAGGATTTGAAGATATATCGTTGCTAGTTGATGTGGGCGGAGGGATAAAGCAACTTGAAGGAGACATGTTTAAAAGTGTTCCAAAAGGTGACGCTAACATATTGAAGGCAGTGTTGCACAATTGGTCCGATGATAAATGCTTACAAATTTTAAAGAATTGTTACGAAGCTTTGCCACAAAATGGGAAGGTAATCGTTGTGGATATCATAGTGCCTGAAGCAATTCACTCAACTGAGGCGGATAAAATGGTTACTGGCTTTGACAACCTCATGTTCTTGGATGGTGGGATCGAAAGAACCGAGAAAGAATTTGAGAATTTATGCAAACTTTCAGGATTTTCTGATTTTCAAGTTGTTGGTTGTGTCTTTTCTGCTCTAGGAGTGATAGAATTTCGTAAGTGA | 756 | 0.3915 | MLCLLASHSLLTCSTRTNEDDHTTQRLYQLSLAGRYFVKDEHKGSLAFLSTFLSHQTIVDVFLNFKEILLDFDKGVFEKVHGVPIYEGIKSDPTLSKVFNEAMANLGTIEMNRILEIYTGFEDISLLVDVGGGIKQLEGDMFKSVPKGDANILKAVLHNWSDDKCLQILKNCYEALPQNGKVIVVDIIVPEAIHSTEADKMVTGFDNLMFLDGGIERTEKEFENLCKLSGFSDFQVVGCVFSALGVIEFRK | 251 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed1g3063 | 251 | Gene3D | - | 1 | 73 | IPR036388 | - | |
| Aed1g3063 | 251 | Gene3D | - | 76 | 103 | - | - | |
| Aed1g3063 | 251 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 1 | 251 | IPR016461 | GO:0008168 | |
| Aed1g3063 | 251 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 45 | 249 | IPR029063 | - | |
| Aed1g3063 | 251 | Gene3D | Vaccinia Virus protein VP39 | 104 | 133 | IPR029063 | - | |
| Aed1g3063 | 251 | Pfam | O-methyltransferase domain | 75 | 134 | IPR001077 | GO:0008171 | |
| Aed1g3063 | 251 | Pfam | O-methyltransferase domain | 135 | 232 | IPR001077 | GO:0008171 | |
| Aed1g3063 | 251 | PANTHER | O-METHYLTRANSFERASE | 1 | 136 | IPR016461 | GO:0008168 | |
| Aed1g3063 | 251 | PANTHER | O-METHYLTRANSFERASE | 133 | 251 | IPR016461 | GO:0008168 | |
| Aed1g3063 | 251 | Gene3D | Vaccinia Virus protein VP39 | 136 | 239 | IPR029063 | - | |
| Aed1g3063 | 251 | PANTHER | CAFFEIC ACID O-METHYLTRANSFERASE | 1 | 136 | - | - | |
| Aed1g3063 | 251 | PANTHER | CAFFEIC ACID O-METHYLTRANSFERASE | 133 | 251 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed1g3063 | Aed-Chr1 | 27120599 | 27124919 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed1g3063 | 1 | 251 | Monolignol Biosynthesis Gene Families | AT5G54160 | 38.889 | 2.47e-56 | 182 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed1g3063 | - | - | gmx:100784030 | 342.813 |