Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g3058 ATGGCCATAGATTTCCCCATCCTCCTCCTTCTCCACAACAGTAACATAGCTTTGATAATCAAACACACCATGTGCAATAGATCAGAGGATACTAAATACTTAGTTACTATGGAAAACATTAATTTTTTAACTCTTTGGCAGGAGCTTCTTGTTTTAGGTGAGCAGATTGGCGATGTAAAATCGGGTTTGTCAGAAAACATAATTACAAGTCAAATGAAGACAAAAGCTTGTTTACTACCTACCAGTGCTACTAACCCGGAGGAACCTTGCGTAATATGTCAGGATGAATATCAGAATCAAGACAAGATTGGGTTCTTCATTGCGGACATGAATATCACCTAG 342 0.383 MAIDFPILLLLHNSNIALIIKHTMCNRSEDTKYLVTMENINFLTLWQELLVLGEQIGDVKSGLSENIITSQMKTKACLLPTSATNPEEPCVICQDEYQNQDKIGFFIADMNIT 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g3058 113 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 48 104 IPR045191 GO:0061630
Aed1g3058 113 PANTHER OS04G0185500 PROTEIN 48 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g3058 Aed-Chr1 26989364 26990108 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g3058 46 104 C3H Transcription Factor Family AT2G15530 46.032 1.26e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g3058 - K19041 gmx:100820042 83.9593