Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g3052 ATGGAAATCGTGGAAGAGAGTAAATTTTCTAAATTGTTGTCAGAGCTGATAGTTTTGGCCGATGAGGTTGCTTCTCTTGCTAAGAACTCTGTAATCGAGGTGGATATTTTTGCTGAGTTTGCCATGTTGGTTGAGAAATTCCCACCAATCTTCAATGACTTGATGGAGAAAAACACAGTCTTGGACAAGCCACCTATAAGAAAATCCTTGGAATCTCTTGAGAATGAGCTGAGGCGTGCAAAAGCTTTGACAAAAAGCTCCAATTTGAGACAACCAATCAAGCAAATCGAGGACATAACGCATGATATCGGTCGATCCTTGGGCCTTTTACTTGTAGCCAGCCTTGAAGTGTCCACAGATTTCAGAGAAAAGATTGTTGCATTGCAAAGACAATTGATGAATGTGAGGTTCGATGGCAGTTTAAGTGTAGCTTCAAGTCCAAAATCAGAGCTTGCAGGCAGTGAAATGAAGCTGATGGGAGAAATAGAAGAGGAAGTAGTCAATGTCTCTATCGATGATGTTGTTTTGCAGCTTAAGAATGGTAATGATGAAGAATTTGCAGTTTCACTTATGAGACTAAAGGAGTTCATGAGGAGTGAAAGACTTGATGGTGGCTTGATTAATGAGGAAGCATTTCTTGCCATTCTTTTCAATCGGCTAGGTTCGTGTAAGGCAGACAATAGGTTGGCGATAATTCGATTGCTACGAAGTATTGCTTTAGCAAATGCAGTGGTGAAGTCACTTACAAGAGATTCAGAAGAGAGGAAGGAAGCAGTGGGGCTGTTGCTAGACCTCTCTGACATTCAAGCAGTTCGACGGCGAATTGGAAGAATTCAAGGTTGCATTGTTATGTTAGTTGCAATACTCAATGGTGATGACCTTGATGCCTCAAATGATGCGGCAAAGTTGTTGGATATATTGTCTAGTAATACTCAAAATGCACTTCATATGGCTGAGGCTGGCTACTTTAAGCCACTGGTACGGTATTTAAAAGAAGGGTCTGACATGAACAAGATCCTAATGGCGACAGCGCTTTCTAGGTTGGAGCTCACTGATCACAGCAAACTTTCCCTTGGAAAAGCTGGAGCAATTGATCCCCTTGCCAACATGTTTAGTACCGGGAAACTCGAGTCCAAGTTATCGGCTCTAAACGCGCTACAAAACCTGTCTAGCATGACAGAAAATGTGCAACACTTGATCAGATCTGGGATTGCAGGATCTCTGCTACAGCTTCTCTTCTCAGTAACATCTGTGCTCATGACATTGCGTGAGCCTGCATCGGCTATTCTTGCAAGAATCGCTCAGTCTGAGTCCATCCTTGTTAATGAAGACGTGGCTCAACAGATGCTTTCACTTCTGAATCTCTCTAGCCCAATAATTCAAGGCCATCTATTAGAAGCTCTGAATAACATAGCTTCCCATCCTGGTGCATCCAAAGTGAGAAGGAAAATGAAGGAAAAAGGTGCACTTCAGCTTCTATTGCCCTTTTTGAAGGAAAACACCACCAAAGTCAGGAGTAAGGTCTTGCAATTGCTGTACACTCTCTCGAAAGATCTAACCAACGAGTTGACAGAACATCTTGATGAAACACATCTTTTCAACATTGTTGATATAGTCTCGACATCAAAATTAGATAGTGAAAAGGCTGCGGCTGTTGGCATACTGAGTAATCTTCCTGCTAGTAATAAAAAAGTGACTGATATACTGAAGAGGGCAAATTTGCTGCCATTATTAATATCCATCATGTATTCTATCACAGGAAGTGTTTCATCAACAACAAATAGCTTAGTAGAGAATATTGCAAGTGTTATTATTCGCTTCACAAACTCCTCTGACAAGAAACTACAGCTTCTTTCAGCTGAACAAGGGGTGATTCCTTTGCTTGTGAAACTTCTCTCAAGTGGTTCACCAATTGCAAAATCGAGGGCTGCGATCTCTCTGGCTCAGCTATCGCAGAATTCTGTGTCTCTTACAAAGTCTAGAAAGTCTCGGTGGTCATGTGTTCCACCATCGATGAATGCATATTGCGAAGTTCATGACGGATACTGCTTTGTCAACAGCACATTTTGTTTGGTCAAGGCAGGTGCTGTTTCTCCCCTTATCCAACTATTGGAAGATACTGAGAGAGAAGTAGTTGAAGCTGCTTTGCTTGCTCTATCAACACTTTTGCAAGATGAAATCTGGGAAGGTGGTGTCAATTCCATTGCCAAGGTGTCAGGTGTGCAAGCTGTTATAAAAAGTCTTCAAGTTGAGGATGCAAAGGTTCAAGAAAAAGCAATATGGATGTTGGAGAGAATATTCAAGGTTCAAGAACATAGAGTAAAATATGGAGAATCTGCTCAGGTGGTTCTTATTGATCTTGCACAGAAGAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTATTAGCTGAGCTGGAACTCTTGCAATCTCAATCAAGTTACTTTTAA 2451 0.4137 MEIVEESKFSKLLSELIVLADEVASLAKNSVIEVDIFAEFAMLVEKFPPIFNDLMEKNTVLDKPPIRKSLESLENELRRAKALTKSSNLRQPIKQIEDITHDIGRSLGLLLVASLEVSTDFREKIVALQRQLMNVRFDGSLSVASSPKSELAGSEMKLMGEIEEEVVNVSIDDVVLQLKNGNDEEFAVSLMRLKEFMRSERLDGGLINEEAFLAILFNRLGSCKADNRLAIIRLLRSIALANAVVKSLTRDSEERKEAVGLLLDLSDIQAVRRRIGRIQGCIVMLVAILNGDDLDASNDAAKLLDILSSNTQNALHMAEAGYFKPLVRYLKEGSDMNKILMATALSRLELTDHSKLSLGKAGAIDPLANMFSTGKLESKLSALNALQNLSSMTENVQHLIRSGIAGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNEDVAQQMLSLLNLSSPIIQGHLLEALNNIASHPGASKVRRKMKEKGALQLLLPFLKENTTKVRSKVLQLLYTLSKDLTNELTEHLDETHLFNIVDIVSTSKLDSEKAAAVGILSNLPASNKKVTDILKRANLLPLLISIMYSITGSVSSTTNSLVENIASVIIRFTNSSDKKLQLLSAEQGVIPLLVKLLSSGSPIAKSRAAISLAQLSQNSVSLTKSRKSRWSCVPPSMNAYCEVHDGYCFVNSTFCLVKAGAVSPLIQLLEDTEREVVEAALLALSTLLQDEIWEGGVNSIAKVSGVQAVIKSLQVEDAKVQEKAIWMLERIFKVQEHRVKYGESAQVVLIDLAQKSDSRLKSTVAKVLAELELLQSQSSYF 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g3052 816 Gene3D - 682 814 IPR011989 -
Aed1g3052 816 Gene3D - 346 663 IPR011989 -
Aed1g3052 816 Coils Coil 70 90 - -
Aed1g3052 816 Gene3D - 224 345 IPR011989 -
Aed1g3052 816 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 1 816 - -
Aed1g3052 816 SUPERFAMILY ARM repeat 393 771 IPR016024 -
Aed1g3052 816 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 695 722 IPR000225 GO:0005515
Aed1g3052 816 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 816 - -
Aed1g3052 816 SMART arm_5 684 724 IPR000225 GO:0005515
Aed1g3052 816 SMART arm_5 477 517 IPR000225 GO:0005515
Aed1g3052 816 SMART arm_5 612 652 IPR000225 GO:0005515
Aed1g3052 816 SMART arm_5 728 768 IPR000225 GO:0005515
Aed1g3052 816 SMART arm_5 562 602 IPR000225 GO:0005515
Aed1g3052 816 SMART arm_5 310 350 IPR000225 GO:0005515
Aed1g3052 816 SMART arm_5 351 391 IPR000225 GO:0005515
Aed1g3052 816 Pfam Armadillo/beta-catenin-like repeat 690 722 IPR000225 GO:0005515
Aed1g3052 816 SUPERFAMILY ARM repeat 171 413 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g3052 Aed-Chr1 26765828 26769877 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g3052 243 816 U-box Gene Family AT1G76390 29.887 1.67e-47 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g3052 K08332 - gmx:100791453 1365.13