Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g3025 ATGTGCCAAGCTGGGAACAAGTACTGTGCTGATTGTGGATCATTGGATCCAAAATGGGTGTCTTCAAATCATGGAGTATTTATTTGCATCAAATGCTCTGGCATACATAGAAGTCTAGGTGTCCATATATCGAAGGTTCTATCACTAAAGCTAGATGAATGGACAGAAGAACAAGTTGATGAATTGGTGACGTTTGGTGGAAATACAGTAATTAATAAGAAGTATGAAGCCTTCCTTCCAAATAGTATAAAAAAGCCAAAACCAAATTCTTCCCTTGAGGAACGCTTTGATTTTATTAGGTAA 303 0.3696 MCQAGNKYCADCGSLDPKWVSSNHGVFICIKCSGIHRSLGVHISKVLSLKLDEWTEEQVDELVTFGGNTVINKKYEAFLPNSIKKPKPNSSLEERFDFIR 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g3025 100 PRINTS HIV Rev interacting protein signature 6 25 IPR001164 GO:0005096
Aed1g3025 100 PRINTS HIV Rev interacting protein signature 25 42 IPR001164 GO:0005096
Aed1g3025 100 PRINTS HIV Rev interacting protein signature 46 67 IPR001164 GO:0005096
Aed1g3025 100 SUPERFAMILY ArfGap/RecO-like zinc finger 3 100 IPR037278 -
Aed1g3025 100 CDD ArfGap 3 100 - -
Aed1g3025 100 Pfam Putative GTPase activating protein for Arf 3 99 IPR001164 GO:0005096
Aed1g3025 100 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 1 100 - -
Aed1g3025 100 SMART arf_gap_3 1 98 IPR001164 GO:0005096
Aed1g3025 100 ProSiteProfiles ARF GTPase-activating proteins domain profile. 1 100 IPR001164 GO:0005096
Aed1g3025 100 Gene3D Arf GTPase activating protein 1 100 IPR038508 -
Aed1g3025 100 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 100 IPR044518 GO:0005096|GO:0005543
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g3025 Aed-Chr1 26100111 26101819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g3025 3 100 C2H2 Transcription Factor Family AT3G07940 71.429 1.99e-47 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g3025 K12486 - gmx:100804342 187.578