Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g3014 ATGTCCAGCCACTACGACACCTCCTTCGCGGACCACAAGCTCTGCGGTTTCCTCTGTGCGGTTCTCACATTCCCTCCCTGCAACGACGACACCGACAGCATAACCTTCGCCGAGCGCTGCGAAATCTTCGGCGAAGGCGGCGAGGTCGGGTTCCAGACGCATAACGGCGTCGTTTTGGGCCCGGTGCTCGATTCGTCGCCGCAATGCAAGAAAACGAAGAAGATTGGGATGGTGAACGGGAGCGTGAGCGTGGTCCACCAGCTCCACGCCATGGTCGCCCGCAAGTGCGCCAGAATCGACGCTCGCGTCGTCTGCGTCGCGCTTCCTAGGGCTGTGGTGCTGGTTGACGTGTATGTTCCAAATCAGGTGTGGAGTGGCTGGCAGTTCCCGCGATCGGGACCCGTCGCCGGCGCCGTCTTTCGCCACTTGGGCTGTGATTGGAACGAGAGACGTTCAATGCTTTCATATCCAGACTATTGTAGGAAGACTCGTGGAGCAAACGAGAGCATTTGGAACCTTTCTGATTGTCATGTACTTGGTTGTAAGATCCATTCACGTGTGAGCAATCCTTCAAGGAAAAGGCTATTTGAACTTCATGAAATTTTTAAGACACTACCAGGTGTAGGAAAATGGCAGACATTTAATAGTTCCAAGATAATCCCTATGGATAACATTTGCAGATCAGGCATCTGGGAATTATCTGATGATATTATAACTAAAATTTTATCTTCCCTGGGCCCAATGGACCTCACTAGGGTTTCTGCAACATGTCATCATCTAAGATCCTTGGCTGCTTCAGTAATGCCTTATACAAAGTTAAATCTGTTTCCTCATCAGAGGGCAGCAGTTGAGTGGATGTTACATCGTGAGCGAAATGCTGAGCTTTTGCCACATCCTTTATTTGTAGTTCTCTCAACTGACAATGGCTTTAGTTTCCATGTAAATACTGTAACTGGTGAAATTGTCACTGGGAAAGCTCCCACCACCAAGGATTTCCGTGGAGGTATGTTTTGTGATGAGCCTGGCTTGGGTAAGACTGTAACAGCTCTCTCTCTTATTATGAAGACGCGAGGTACATTGGCAGACCCGCCAGATGGGGCACAAGTAGTCTGGTGTCAACATAATGGCAATCAGAAATGTGGCTATTATGAGATCAGTGGTAATAACATCACTGGTTGTACTACCTGGGGTAAGAGGAATCTGTGCCAAGATACCAGTAAAACTAATGATAACCATGATTACTCCTCCAAAAGAGCCAGGTTGACAGAGCCTGATCAACAAATCACTAAACTTCATGGTTCATGTTCCAGGGAAGAAAACAAATCACCTGTGGATGAATGCTTTAAGGAATCCATGCATTCAAATCGGTCCACTAGGAGTTTGAGTCGCATAAAGAAAAATCTACAGTTCTCATATGAAGATGAAGCTATGATTTCCAAGGAAAGAAAATTTGGTGAAGGATTAATTAAAGCAAAGCATTCATCAGATGTAACATCTCATGTATCTCAAAACAAGTTACCTGGGAAGCCTAAAGGTGACTGTTTTGAGTACAGTGATACATGGATTCAGTGTGATGCTTGTCACAAGTGGCGAAAGCTTGTAGACAATAGTATGGCTAATTCTAGTGCAGCTTGGTTTTGTAGTATGAACACTGACCCTTTGTATCAAAGTTGTAGTATCCCCGAACAATATTTTCATAATATCTGTAAGATAACACACTTGCCAGGGTTTCACTTGAAAGGAACTTGTGGAGGTGAGAAACAAAATGTTTCTTTTTTCACTAGCTTGCTTAAGGAGCACTACTCATTGATAAATTCTCAGACAAAGAAGGCCCTGACGTGGTTGGCTAACATTTCAACAGACAAGCTTGCAGGAATGGAAACAAATGGCATAAGGGGTCCTATTTTAAACATTTGTGCTGCATCTAATAGACATTTCCACAAAATATTTCAAGCATTTGGCCTCTTAAAGAGAGTAGACAAAGGTGTGTGCAAGTGGTACTACCCTCAACATCTAAACAATCTGACTTTTGATGTAGCTGCCCTTGGCATGGCTCTCAGTGAGCCTTTAGATCTTGTTAGGTTATACTTGTCAAGAGCTACCCTGGTAGTTGTTCCAGCAAACTTGGTTGATCATTGGAAAACACAAATAGAAAAGCATGTGAGGCCTGGTCAATTGCGGGTTTATGTTTGGACTGATCATCGGAAGCCATCTGTGCATTGTCTCGCATGGGATTACGATGTTGTCATAACTACTTTTAGTCGTTTGAGTGCAGAGTGGGGCCCACGTAAGAGGAGTGCTTTGATGCAAGTGCATTGGTTTAGGATAATTTTAGATGAAGGGCACACTCTTGGGTCAAGCCTGAACTTAACTAACAAGTTGCAAATGGCTATTTCATTGATAGCTTCAAATCGATGGATACTAACAGGAACTCCAACGCCTAACACTCCTAACAGCCAACTTCCTCATCTACAACCATTGCTAAGGTTCCTTCATGAAGAATCTTATGGAATGAATCAAAAGTCATGGGAAGCTGGTGTGCTTAGGCCATTTGAAGCAGAGATGGAGGAAGGAAGGTCTCGTCTGTTACATATACTTCAAAAATGCACGATTAGTGCTAGAAAGCAAGATTTACAAAGCATTCCACCATGCATGAAGAAAGTTGTTTATCTAGATTTTAATGAGGAGCATGCTAGAAGTTACAATGAATTGGTAATCACTGTACGACGTAATGTATTGATGGCTGATTGGAATGATCCTTCACACATTGAGAGTCTACTGAATCCAAAACAGTGGAAATTTCGTAGTGCAACGTTAAAAAATGTGAGGCTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAAGAAACAATGGATATGTTAGTACAAAGTGGTCTGGACCCTACTTCAGGAGAGTATACCTCCATAAGATATAATCTCTTGTGTGGTGGTCAATGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCGCTCATTACACCATGTCGACATCTGTTGTGCCTTGATTGTGTTTCTATAGACAATACAAAGTGTACTTATCCTGGCTGCAGTAAATTGTATGAGATGCAGAGTAGAGAGCCCCGACCTGAAAATCCTAAACCGAAGTGGCCTGATAATTGGGATCCTGATTGGCAATCTACATCTAGTAGTAAAGTCTCCTATCTTGTCCAGAGGTTGAAAGCTTTGCAAGGAACCAATGAAGACACAAATAGCAATGATGAGATGCATATTGAGAATAGTTTCTATCTGCGTAGAAGTGATGACAAATCATCAATTCATACATGTTCTATGAGCAGCACTAAGGCCAATTTGAACCCTGAAAAAGTTCTGATATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTGACTATTGCTGGTATCAAATATACTGGAATGTATAGCCCAATGCATTTCAGTAACAAGAAGAAGTCATTAGCCATGTTCCAGCATGATTCAAGTTGCATGGCACTTCTGATGGATGGGAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACACATGTATTTCTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCTCATCGTATGGGTGCTTCTCGTCCTATTCATGTGGAAACATTAGCAATGCGTGGTACAATTGAAGAGCAAATGCTAGACTTTTTACAGGATGCTGATAACTTTAGAAGATTACCAACTAAGGATGTTACCAAATCTGATGATGATAGTGGGGGACGAGGATGTAGATCATTGCATGATTTTGCTGAAAGTAGTTATCTACTGAAACTTAGATCTGTGTTTACTAATTCGGAAAGCCCAGAAGGTTTGTACATACTGTTTTTCCCTAGCTTTTTTCTGTTAGCAAACATAGATTTATCAACAGAAAGATGA 3942 0.4252 MSSHYDTSFADHKLCGFLCAVLTFPPCNDDTDSITFAERCEIFGEGGEVGFQTHNGVVLGPVLDSSPQCKKTKKIGMVNGSVSVVHQLHAMVARKCARIDARVVCVALPRAVVLVDVYVPNQVWSGWQFPRSGPVAGAVFRHLGCDWNERRSMLSYPDYCRKTRGANESIWNLSDCHVLGCKIHSRVSNPSRKRLFELHEIFKTLPGVGKWQTFNSSKIIPMDNICRSGIWELSDDIITKILSSLGPMDLTRVSATCHHLRSLAASVMPYTKLNLFPHQRAAVEWMLHRERNAELLPHPLFVVLSTDNGFSFHVNTVTGEIVTGKAPTTKDFRGGMFCDEPGLGKTVTALSLIMKTRGTLADPPDGAQVVWCQHNGNQKCGYYEISGNNITGCTTWGKRNLCQDTSKTNDNHDYSSKRARLTEPDQQITKLHGSCSREENKSPVDECFKESMHSNRSTRSLSRIKKNLQFSYEDEAMISKERKFGEGLIKAKHSSDVTSHVSQNKLPGKPKGDCFEYSDTWIQCDACHKWRKLVDNSMANSSAAWFCSMNTDPLYQSCSIPEQYFHNICKITHLPGFHLKGTCGGEKQNVSFFTSLLKEHYSLINSQTKKALTWLANISTDKLAGMETNGIRGPILNICAASNRHFHKIFQAFGLLKRVDKGVCKWYYPQHLNNLTFDVAALGMALSEPLDLVRLYLSRATLVVVPANLVDHWKTQIEKHVRPGQLRVYVWTDHRKPSVHCLAWDYDVVITTFSRLSAEWGPRKRSALMQVHWFRIILDEGHTLGSSLNLTNKLQMAISLIASNRWILTGTPTPNTPNSQLPHLQPLLRFLHEESYGMNQKSWEAGVLRPFEAEMEEGRSRLLHILQKCTISARKQDLQSIPPCMKKVVYLDFNEEHARSYNELVITVRRNVLMADWNDPSHIESLLNPKQWKFRSATLKNVRLSCCVAGHIKVTHAGEDIQETMDMLVQSGLDPTSGEYTSIRYNLLCGGQCVRCKEWCRLPLITPCRHLLCLDCVSIDNTKCTYPGCSKLYEMQSREPRPENPKPKWPDNWDPDWQSTSSSKVSYLVQRLKALQGTNEDTNSNDEMHIENSFYLRRSDDKSSIHTCSMSSTKANLNPEKVLIFSQFLEHIHVIEQQLTIAGIKYTGMYSPMHFSNKKKSLAMFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMLDFLQDADNFRRLPTKDVTKSDDDSGGRGCRSLHDFAESSYLLKLRSVFTNSESPEGLYILFFPSFFLLANIDLSTER 1313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g3014 1313 SMART helicmild6 1133 1215 IPR001650 -
Aed1g3014 1313 Pfam CW-type Zinc Finger 520 563 IPR011124 GO:0008270
Aed1g3014 1313 Gene3D - 679 874 IPR038718 -
Aed1g3014 1313 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 357 IPR027417 -
Aed1g3014 1313 ProSitePatterns Zinc finger RING-type signature. 1008 1017 IPR017907 -
Aed1g3014 1313 Pfam F-box domain 232 270 IPR001810 GO:0005515
Aed1g3014 1313 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 772 1250 IPR027417 -
Aed1g3014 1313 SUPERFAMILY F-box domain 224 266 IPR036047 GO:0005515
Aed1g3014 1313 SMART fbox_2 233 273 IPR001810 GO:0005515
Aed1g3014 1313 ProSiteProfiles F-box domain profile. 227 273 IPR001810 GO:0005515
Aed1g3014 1313 Gene3D - 516 568 - -
Aed1g3014 1313 Pfam Helicase conserved C-terminal domain 1114 1215 IPR001650 -
Aed1g3014 1313 CDD SF2_C_SNF 1118 1225 - -
Aed1g3014 1313 CDD DEXDc_SHPRH-like 689 871 - -
Aed1g3014 1313 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 665 830 IPR014001 -
Aed1g3014 1313 ProSiteProfiles Zinc finger CW-type profile. 515 566 IPR011124 GO:0008270
Aed1g3014 1313 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 68 1274 - -
Aed1g3014 1313 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 695 864 IPR027417 -
Aed1g3014 1313 PANTHER OS01G0952200 PROTEIN 68 1274 - -
Aed1g3014 1313 SMART ultradead3 271 841 IPR014001 -
Aed1g3014 1313 Gene3D - 1027 1273 IPR027417 -
Aed1g3014 1313 Pfam SNF2-related domain 278 912 IPR000330 GO:0005524|GO:0140658
Aed1g3014 1313 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1109 1261 IPR001650 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g3014 700 1235 RAD5 or RAD16-like Gene Family AT5G22750 26.389 4.43e-44 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed1g3014 SNF2_N 2.6e-98 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g3014 - - gmx:100803102 2410.95