Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g3012 ATGTGGGTGCATTGCGGAACCCATTTTAGAACTCAAAGCTTTTGTGATGAAACATCTCAACTCCTGAAACTTCCTAGAACAAGCTCTTGGATTCCTGTTCAAAATTCAAGTGGGTGGCCCTCGAAGCGTGTTGCAGTGGATCCTCTCCTTTCTTCAGGAGCCTCTCTGAGTACCGTGTCTCAAAATGCTATTACTTTACCACCTTTTCCTGGTAGGGAGTGCTCAATAGACCAAGAAGGGAGCACTGATCCACAAAACCATCTCTTATTTGGTGTCAATATAGAGCACTCGTCATTGCTCATGCCTAAAAGGATGTCAAGCCTTGAGGGGGTCAGCGGCAACAATGACTCCTCAACCTTGCCATATCAATCTTCTAATTATCTGAATACTACCACAGGCACTGATTCTTCATTGAATCATGGAATGACACCCAACATAGGCGACTCGGGTTTCCTGCAGAGTCCGGAAAATTCTGGACAAGGAAACCCACTGAACAAAACCTATGTGAAGGTTTATAAGTCAGGGTCCTTTGGAAGGTCATTGGATATCACTAAATTCACCAGTCACTATGAGCTGCGTGGTGAACTCGTCCGCATGTTTGGCCTTGAAGGCAAGTTGGAGGACCCTGTGAGATCAGACTGGCAGCTTGTATTTGTAGACCGAGAGAACGATTTTCTTCTCCTCGGTGATGGCCCCTGGCCGGAATTCGTAAATAGTGTATGGTGCATAAAGATACTTTCTCCTCGGGAAGTGCAGGAAATGGGCAACAATGGCCTTTAG 780 0.4603 MWVHCGTHFRTQSFCDETSQLLKLPRTSSWIPVQNSSGWPSKRVAVDPLLSSGASLSTVSQNAITLPPFPGRECSIDQEGSTDPQNHLLFGVNIEHSSLLMPKRMSSLEGVSGNNDSSTLPYQSSNYLNTTTGTDSSLNHGMTPNIGDSGFLQSPENSGQGNPLNKTYVKVYKSGSFGRSLDITKFTSHYELRGELVRMFGLEGKLEDPVRSDWQLVFVDRENDFLLLGDGPWPEFVNSVWCIKILSPREVQEMGNNGL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g3012 259 Pfam AUX/IAA family 163 251 IPR033389 -
Aed1g3012 259 PANTHER AUXIN RESPONSE FACTOR 14 259 - -
Aed1g3012 259 Gene3D - 163 255 - -
Aed1g3012 259 SUPERFAMILY CAD & PB1 domains 165 241 - -
Aed1g3012 259 MobiDBLite consensus disorder prediction 132 163 - -
Aed1g3012 259 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 14 259 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed1g3012 259 ProSiteProfiles PB1 domain profile. 166 250 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g3012 Aed-Chr1 25839413 25841004 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g3012 16 259 B3 DNA Binding Superfamily AT1G30330 62.547 9.30e-91 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aed1g3012 AUX_IAA 5.4e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g3012 - - gmx:100796447 436.032