Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2992 ATGGGTCTGCCTGAGGTACAGTTTCATGTTCTGGCCGTTGATGACAGCATTATTGACAGAATGTTGATTGAGAGGCTCCTCAAAACCTCTTCCTTCCATGTTACTGCTGTGGATTCTGGTAGTAAGGCTTTGAAGTTTCTTGGTTTGGTTGAAGATGAGCAGCAGAGAATTCAAGAGCCTCCTCCTTCTATTTCTCTAGAATCCCATCAGGATGTAGAAGTAAACCTGATCATAACTGATTACTGTATGCCAGAAATGACAGGCTATGATCTGCTGAGAAAAATCAAGGAGTCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCGGAGAATGTCCCAGCAAGAATCAACAGATGCCTAGAAGATGGAGCTGATGAATTCTTTCTGAAACCAGTTCAACAGTCAGATGTGAACAAGCTGAGGCCACATTTGATGAAATCAAAAGTTAAGGATGAGGAGGAAGAGCAACAAATCAACAACAAGAGGAAGGAAACAGAGGAAATCCCTTCCCCAGATAAAACTAGGACAAAATTGGAGCCTCAAAAAGTTGTTAATAATTCCAACTAG 573 0.4119 MGLPEVQFHVLAVDDSIIDRMLIERLLKTSSFHVTAVDSGSKALKFLGLVEDEQQRIQEPPPSISLESHQDVEVNLIITDYCMPEMTGYDLLRKIKESKSLKDIPVVIMSSENVPARINRCLEDGADEFFLKPVQQSDVNKLRPHLMKSKVKDEEEEQQINNKRKETEEIPSPDKTRTKLEPQKVVNNSN 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2992 190 SUPERFAMILY CheY-like 8 146 IPR011006 -
Aed1g2992 190 CDD REC_typeA_ARR 10 142 - -
Aed1g2992 190 Gene3D - 9 187 - -
Aed1g2992 190 MobiDBLite consensus disorder prediction 141 190 - -
Aed1g2992 190 MobiDBLite consensus disorder prediction 143 181 - -
Aed1g2992 190 PANTHER RESPONSE REGULATOR ARR8, PUTATIVE-RELATED 6 185 - -
Aed1g2992 190 Pfam Response regulator receiver domain 10 139 IPR001789 GO:0000160
Aed1g2992 190 SMART REC_2 8 143 IPR001789 GO:0000160
Aed1g2992 190 Coils Coil 148 168 - -
Aed1g2992 190 ProSiteProfiles Response regulatory domain profile. 9 147 IPR001789 GO:0000160
Aed1g2992 190 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 185 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2992 Aed-Chr1 25537704 25540023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2992 1 158 Response Regulator Gene Family AT3G57040 65.839 6.54e-70 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed1g2992 Response_reg 8e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2992 K14492 - gmx:100818762 280.411