Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed1g2990 | GTAGTCTATTGTGGAATAAACCTCCATGACATCAACAACACTTTAGAGGGAACATTGCATGACCAAAAGTTTTTAAAGAGGAACATTCTTGGTCAAGAATCACTAGAAGTAGTAGAAGCTGCAAGTAAAGGATTCGATGACGTGCACAAGGAGCATGTGAAACTAGATCTTGGATTGGGTCAAGATTTTGATGGGCCTAGAGAACAATTCTATCGATTGTTGGAATCCGATAGCTATGTTGGGAATCCAGGGGATTACATCGATGCGATGTGGCGGACGGAGAGCAATGACGAAAGTAGGAGAGGAGCATCGTCGGCATCAAAGGTGAAGGTGGAAGCCTTGGCTACAATGAAGATTGCATCGAGAAGCGAATTCGTGGCGTGCACTATATGTAAGGATTTGCTCGACTTTGGAGACTCCACAAAGAGGTTACTGTGCGGACATCGGTATCATGGCGATTGCATTTGTCCTTGGTTGAGTTCTCTAAATTCTTGCCATGTATGTAGCTTTGAGCTACCAACAGATGATAAGGAATACAAGGGAAAGAGTGGTTAA | 555 | 0.436 | VVYCGINLHDINNTLEGTLHDQKFLKRNILGQESLEVVEAASKGFDDVHKEHVKLDLGLGQDFDGPREQFYRLLESDSYVGNPGDYIDAMWRTESNDESRRGASSASKVKVEALATMKIASRSEFVACTICKDLLDFGDSTKRLLCGHRYHGDCICPWLSSLNSCHVCSFELPTDDKEYKGKSG | 184 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed1g2990 | 184 | Pfam | Ring finger domain | 128 | 168 | IPR001841 | - | |
Aed1g2990 | 184 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 91 | 175 | IPR013083 | - | |
Aed1g2990 | 184 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 95 | 182 | - | - | |
Aed1g2990 | 184 | SUPERFAMILY | RING/U-box | 127 | 175 | - | - | |
Aed1g2990 | 184 | SMART | ring_2 | 128 | 168 | IPR001841 | - | |
Aed1g2990 | 184 | PANTHER | OS06G0101300 PROTEIN | 95 | 182 | - | - | |
Aed1g2990 | 184 | ProSiteProfiles | Zinc finger RING-type profile. | 128 | 169 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed1g2990 | Aed-Chr1 | 25500404 | 25502246 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed1g2990 | 74 | 180 | C3H Transcription Factor Family | AT5G01980 | 41.739 | 1.12e-21 | 89.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed1g2990 | - | - | gmx:100780991 | 150.984 |