Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2990 GTAGTCTATTGTGGAATAAACCTCCATGACATCAACAACACTTTAGAGGGAACATTGCATGACCAAAAGTTTTTAAAGAGGAACATTCTTGGTCAAGAATCACTAGAAGTAGTAGAAGCTGCAAGTAAAGGATTCGATGACGTGCACAAGGAGCATGTGAAACTAGATCTTGGATTGGGTCAAGATTTTGATGGGCCTAGAGAACAATTCTATCGATTGTTGGAATCCGATAGCTATGTTGGGAATCCAGGGGATTACATCGATGCGATGTGGCGGACGGAGAGCAATGACGAAAGTAGGAGAGGAGCATCGTCGGCATCAAAGGTGAAGGTGGAAGCCTTGGCTACAATGAAGATTGCATCGAGAAGCGAATTCGTGGCGTGCACTATATGTAAGGATTTGCTCGACTTTGGAGACTCCACAAAGAGGTTACTGTGCGGACATCGGTATCATGGCGATTGCATTTGTCCTTGGTTGAGTTCTCTAAATTCTTGCCATGTATGTAGCTTTGAGCTACCAACAGATGATAAGGAATACAAGGGAAAGAGTGGTTAA 555 0.436 VVYCGINLHDINNTLEGTLHDQKFLKRNILGQESLEVVEAASKGFDDVHKEHVKLDLGLGQDFDGPREQFYRLLESDSYVGNPGDYIDAMWRTESNDESRRGASSASKVKVEALATMKIASRSEFVACTICKDLLDFGDSTKRLLCGHRYHGDCICPWLSSLNSCHVCSFELPTDDKEYKGKSG 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2990 184 Pfam Ring finger domain 128 168 IPR001841 -
Aed1g2990 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 175 IPR013083 -
Aed1g2990 184 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 95 182 - -
Aed1g2990 184 SUPERFAMILY RING/U-box 127 175 - -
Aed1g2990 184 SMART ring_2 128 168 IPR001841 -
Aed1g2990 184 PANTHER OS06G0101300 PROTEIN 95 182 - -
Aed1g2990 184 ProSiteProfiles Zinc finger RING-type profile. 128 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2990 Aed-Chr1 25500404 25502246 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2990 74 180 C3H Transcription Factor Family AT5G01980 41.739 1.12e-21 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2990 - - gmx:100780991 150.984