Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2986 ATGAGCATGTTAGGCCTTAGAGACCTAGTTCTCATAGCTCCAACCCCTTCTTCCCTTCACCACCACCATCACCAAGGCCAACCCATTTCAGAAAACCACACTCATCACTCTCACACTCACACACACACTCACACTCACAACAACCTTAATCCTCTGCCTTCTTCTTCTTCTTCTGCAGCAGCAGCTTCTCTCAGTGTTGGCTTTGGCATTTTCCCTCTCCTCACTGCCACACCCTGTGTTCCAACACAGCCTCACCAAAACAACGAGGTTCAAGATCACTGTGGTGGAAACACCAACACCAACACCACCACTAATTATTGGAACCTTAAGATGTGCCCTGAAGTTATGAACAATCCTAATCCTCCTCCAAAGAAGGGTGTGATCAACGTTGCTGTTGACGATGACGACGATGACGACAACGATGATAAGAATAAGGGTGGTGCGATGGAGAGTGAGGAAAACGGGGTATATGGACCTGGCTTTAGGGTGTGCCAGGATTGTGGCAACAGGGCAAAGAAAGATTGCATCTTTAGAAGATGCAGGACTTGCTGCAAGGGACGTGGGTATGGCTGCAACACTCACGTGAAGAGCACGTGGGTCTCCTCGGTTCGGCGCCGGGAGCGCGAGCGCGAGATCGTGGTTGTCGCTCCCGGCGGTGGTGGTGACGGTCACGGTGGCGGCGGTGGTAAGAGGCAAAGGGCTGTGGTGGGGTCATCTCGGAATGCCACTGCCACTTCTCATACTTCTCATAGTTCCAACTCTAATAATGCTACTACACCTAAGAGCTTAGCTACTACCTCTTTTCTCCAAGATGGTAGCTTCAAGCAAACTTTGCCAGGCCATGTTCGTGCACCTGCAGTGTTCAAGTGCCATAGGGTCTCAGCCATTGGGAATGGTGAAGGTGAGTATGCATACATGGCCACTGTCCACATTAGTGGCCATGTGTTCAAAGGGTTTCTCTATGACCATGGTGTTGATGGGAAAACCGCAGCAAATGCTGCAGCAGCAGCAGTGGTAGTGCCTAATTGTGTCTCGGAACTGCAGCTTGGGAACAATTGCAGTGGGAAAAACAGAGAATGTTCCTCTTCAATTGCAAATAACAATGCATACCCTGCTTCTGCCACTTGA 1128 0.5018 MSMLGLRDLVLIAPTPSSLHHHHHQGQPISENHTHHSHTHTHTHTHNNLNPLPSSSSSAAAASLSVGFGIFPLLTATPCVPTQPHQNNEVQDHCGGNTNTNTTTNYWNLKMCPEVMNNPNPPPKKGVINVAVDDDDDDDNDDKNKGGAMESEENGVYGPGFRVCQDCGNRAKKDCIFRRCRTCCKGRGYGCNTHVKSTWVSSVRRREREREIVVVAPGGGGDGHGGGGGKRQRAVVGSSRNATATSHTSHSSNSNNATTPKSLATTSFLQDGSFKQTLPGHVRAPAVFKCHRVSAIGNGEGEYAYMATVHISGHVFKGFLYDHGVDGKTAANAAAAAVVVPNCVSELQLGNNCSGKNRECSSSIANNNAYPASAT 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2986 375 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 374 IPR007818 GO:0003700|GO:0006355
Aed1g2986 375 MobiDBLite consensus disorder prediction 236 261 - -
Aed1g2986 375 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 278 325 IPR006511 -
Aed1g2986 375 MobiDBLite consensus disorder prediction 17 58 - -
Aed1g2986 375 MobiDBLite consensus disorder prediction 118 155 - -
Aed1g2986 375 Pfam Domain of unknown function (DUF702) 162 326 - -
Aed1g2986 375 MobiDBLite consensus disorder prediction 212 261 - -
Aed1g2986 375 MobiDBLite consensus disorder prediction 44 58 - -
Aed1g2986 375 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 2 374 - -
Aed1g2986 375 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 163 205 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2986 Aed-Chr1 25416612 25419874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2986 164 328 C2H2 Transcription Factor Family AT5G12330 54.217 8.13e-48 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Aed1g2986 DUF702 2.3e-53 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2986 - - gmx:100806835 456.447