Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2964 ATGGAAGATAATAACAATAACGATAACAATAAAGAAGAGAAGCAAGATGATAGCATTAGCAATAGCACAATCATCAAAGAGGATCATCATAATCATAATCATCAGTCTCCAAGGAAATCATCCATTGGCGGTGTCAGTGGCGGTGGCGGTGATAGGTTGAAGAGAGATGAGTGGAGTGAAGGGGCTGTATCAACCCTTCTTGAGGCCTATGAGGCCAAATGGGTGCTGAGAAACAGAGCAAAACTCAAAGGCCATGATTGGGAAGATGTTGCAAAACATGTCTCAGCAAGAGGGAACTCCACCACCAAGTCACCAAAGACTCAGACACAGTGCAAGAACAAGATTGAGTCCATGAAGAAAAGGTACAGATCAGAATCTGCTGCTGCCACCACTGCTGATGCATCATCATCTTGGCCTCTGTATTCTCGCCTCGACGTTCTGCTTCGCGGCACCGGCCCGATTTCTTTTTCACTGCCAACACCGCCGCCGCTGCCGCCACCACCAACAGCAATAGCAATAGCAGCACCATCAATATCTCAATCACCACATATTACTTCAACTACTACCAATAACTTGGTGTTGCTGGAGCCACCTCCTTCTATTGCTCCTCCTCCATCACTTGCAAATATTGCACAAAACTCACATGGGTCCAATGGTGTTGAAAGACTACTAGCCAAGGAAGATGGGTTAGGAGCCAAGTCATCAGAGCATGTATCTAACAAGAATCCAATGGACTCAGATAGTAGCACACCTGCTCTCTACAGTGAAAAGGACAAGGTGAGGTACAAGAGGAAGAAGATGAAAAGTGAGAACAACAACAACAGCAACAAGAGGAGAATTAGGAACAATAACAACAACAACAATAGTAATAATGAAAAGAAGATGGAAATAGCAGAGAGCATAAGGTGGCTTGCAGAAGTGGTGGTGAGGTCAGAAGAAACAAGGATGGAGACAATGAAGGAGATTGAGAGGATGAGAGGTGAAGCTGAGGCTAAGAGAGGGGAGATGGAGCTTAAGAGAACTGAAATCATTGCCAACACACAACTTGAGATTGCTAGGATCTTTGCAAGTACTGTCAATAAAAGTGGTGTTGATTCTTCACTAAGAATTGGAAGAAGTTAG 1122 0.443 MEDNNNNDNNKEEKQDDSISNSTIIKEDHHNHNHQSPRKSSIGGVSGGGGDRLKRDEWSEGAVSTLLEAYEAKWVLRNRAKLKGHDWEDVAKHVSARGNSTTKSPKTQTQCKNKIESMKKRYRSESAAATTADASSSWPLYSRLDVLLRGTGPISFSLPTPPPLPPPPTAIAIAAPSISQSPHITSTTTNNLVLLEPPPSIAPPPSLANIAQNSHGSNGVERLLAKEDGLGAKSSEHVSNKNPMDSDSSTPALYSEKDKVRYKRKKMKSENNNNSNKRRIRNNNNNNNSNNEKKMEIAESIRWLAEVVVRSEETRMETMKEIERMRGEAEAKRGEMELKRTEIIANTQLEIARIFASTVNKSGVDSSLRIGRS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2964 373 MobiDBLite consensus disorder prediction 1 56 - -
Aed1g2964 373 MobiDBLite consensus disorder prediction 232 293 - -
Aed1g2964 373 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 27 369 - -
Aed1g2964 373 MobiDBLite consensus disorder prediction 235 251 - -
Aed1g2964 373 MobiDBLite consensus disorder prediction 1 35 - -
Aed1g2964 373 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 27 369 IPR044823 -
Aed1g2964 373 MobiDBLite consensus disorder prediction 252 275 - -
Aed1g2964 373 Pfam Myb/SANT-like DNA-binding domain 55 146 IPR044822 -
Aed1g2964 373 Coils Coil 319 339 - -
Aed1g2964 373 MobiDBLite consensus disorder prediction 276 293 - -
Aed1g2964 373 Gene3D - 58 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2964 Aed-Chr1 25161850 25164925 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2964 41 354 Trihelix Transcription Factor Family AT3G14180 24.789 9.58e-18 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Aed1g2964 Myb_DNA-bind_4 1.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2964 - - gmx:100799917 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2964 1 25161850 25164925 Aed1g2964 1 25161850 25164925 ECH