Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2960 ATGAAAATCCCGTGTTGTTCGGTTTGCCAAACGCGGTACAACGAGGAGGAGCGAGTTCCGCTTCTGCTCCAATGCGGGCACGGTTTCTGCAGAGAGTGCCTCTCGAGAATGTTCTCGGCTTCTTCTGACGCCACGCTGGCATGTCCCAGGTGCCGCCACGTGTCCACCGTCGGAAACTCCGTGCAGGCGCTCAGGAAGAACTACGCGGTGCTCGCGCTCCTCCATTCCGCGGCCGCCGCCGCCGCGGCCAACGGCGGCGGCGGTGGAAGGTCGAATTTCGACGTCGACTACACCGACGATGAGGAGGACGGCGGCGGAGAGGGAGAGGAGGAGGACGACGACGACGGGAAGCGGCGGCGGAACAGCCGCGAGTCGCAGGCGTCGAGCTCCGGCGTTGGCGGTTGCGCGCCGGTGATGGAAATCGGCGGCGGGGCGCACCAGGACCTGAAGCTGGTGAGGCGGATTGGGGAGGGGAGGAGGGCGGGGGTGGAGATGTGGATGGCGGTGATCAGCGGAGGCGGCGAGGGAGGGCGGCAGAGGTGCCGACACAACGTGGCGGTGAAGAAGGTGGCGGTGGCGGAGGGGATGGATTTGGATTGGGTGCAGGGAAAGTTGGAGGATTTGCGTAGGGCTTCGATGTGGTGCAGGAATGTGTGCACTTTCCATGGGACAATGAGAGTGGAAGATAGTTTGTGTCTTGTGATGGATAAGTGCTATGGATCGGTTCAGTCTGAGATGCAGCGCAATGAGGGGAGGCTCACTCTGGAACAAGTCCTAAGATATGGGGCAGACATTGCACGAGGGGTTGTTGAGCTTCATGCTGCAGGCGTTGTTTGCATGAATTTAAAACCTTCCAATCTTCTTCTTGATGCAAATGGTCATGCTGTGGTTTCTGACTATGGACTTGCTACAATTCTGAAGAAGCCTTCCTGTTGGAAGGCTCGACCAGAGTGTGACTCTGCGAAGATCCATTCCTGTATGGAATGTATAATGCTCAGCCCACATTATACAGCACCTGAGGCTTGGGAACCTGTGAAGAAATCGTTGAATTTGTTTTGGGATGATGGAATAGGTATATCTTCCGAATCAGATGCATGGAGTTTTGGTTGTACATTGGTGGAGATGTGCACGGGTTCCATTCCTTGGGCAGGTTTAAGTGCAGAGGAAATCTATCGAGCTGTCGTTAAAGCTAAGAAACTGCCTCCTCAGTATGCTAGTGTGGTTGGTGGTGGAATTCCGAGGGAATTGTGGAAGATGATTGGAGAGTGCTTGCAATTCAAGCCCTCAAAAAGACCTACTTTTAGTGCAATGCTGGCAATATTTCTCCGTCATTTGCAGGAAATTCCACGCAGCCCTCCTGCAAGCCCTGATAATGGCTTAGATAAGGGCTCTGTGTCAAATGTGATGGAGCCGTCCCCAGTACCTGAATTGGAAGTTCCTCAGGAAAACCCTAACCATCTTCATCGACTTGTGTCTGAAGGAGATACTGCGGGTGTTAGAGATCTTCTTGGAAAGGCTGCTTCAGAAAATGGCAGCAACTACCTATCTTCACTATTGGAAGCTCAAAATGCTGATGGGCAAACAGCTCTCCACTTAGCTTGTAGACGTGGTAGTGCAGAACTTGTTGAGACAATTCTAGAATATAGAGAAGCAAATGTTGATGTATTGGACAAAGATGGAGATCCTCCTCTTGTTTTTGCATTAGCAGCTGGGTCCCCAGAATGTGTTCATAGCCTTATCAAGAGAACTGCTAATGTGTGGTCACGATTGAGAGATGGTGTTGGCCCATCGGTAGCTCATGTTTGTGCCTATCATGGCCAACCAGATTGTATGCGAGAATTACTATTAGCTGGAGCTGATCCCAACGCAGTTGATGATGAAGGTGAATCTGTTCTGCATAGAGCAATTGCCAAGAAGTACACAGACTGTGCTCTTGTGATATTGGAGAATGGAGGCTGTAGATCAATGGCCATCTTGAATTCAAAGAATCTGACACCGCTACACTTGTGTGTGGCAACATGGAATGTTGCTGTTGTGAAGAGATGGGTAGAAGTTGCAACTTCTGATGAGATTGCTGAAGCGATTGACATACCAAGCCCTATTGGCACTGCCTTGTGCATGGCAGCTGCTTCTAAGAAAGACCATGAAAATGAGGGGAGAGAACTGGTGCGGATATTGCTTGTAGCAGGAGCTGATCCATCTGCTCAAGATTCACAGAATGGGAGGACAGCTTTGCATACAGCTGCTATGACGGATGACGTGGACTTGGTTAAGGTTATTCTAGCTGCTGGGGTTGATGTGAACATTCGCAATGTGCACAACAGTATACCTCTTCACTTGGCCTTAGCTAGAGGTGCAAAGTCATGTGTTCGACTGCTTCTTGCTGCTGGAGCAGATTATAATTTGCAGGATGATGATGGTGACAATGCTTTCCATATAGCAGCAGAGACAGCAAAAATGATTCGTGAAAATCTTGACTGGCTTATTGTTATGCTAAAGAATCCTAATGCTGACATTGAAGTCAGAAACCACAGTGGCAAGACACTACGTGACATTTTAGAGGCTCTTCCCCGAGAATGGTTATCTGAAGATCTGATGGAAGCACTCATGAAAAGGGGAGTTCATTTGTTTCCTACAATATTTGAAGTGGGAGACTGGGTGAAGTTTAAAAGATCTGTCACAACTCCAACACATGGATGGCAAGGTACTAAACCAAAGAGTGTTGGTTTTGTGCAAAGTGTTCCAGACAGAGATAATCTCATTGTTTCATTTTGTTCTGGAGAGGTTCATGTTCTGGCAAATGAAGTTATAAAAGTCATTCCATTGGACAGGGGACAACATGTACAATTGAAAGAAGATGTAAAAGAGCCTAGATTTGGTTGGCGTGGACAGTCACGTGACAGCATTGGGACAGTATTATGTGTTGACGATGATGGAATCCTCCGTGTTGGATTTCCTGGAGCATCCAGAGGATGGAAAGCTGACCCAGCAGAGATGGAACGTGTTGAGGAATTCAAGGTTGGAGACTGGGTTCGTATTCGTCCAACTCTTACATCTGCAAAGCATGGACTAGGATCTGTGACACCAGGAAGCATTGGCATTGTATATTGTGTCCGACCAGACAGTAGTCTGTTAATAGAACTAAGCTACCTTCCAAATCCATGGCATTGTGAACCAGAGGAGGTTGAGCATGTTGCTCCTTTTAGGATTGGGGATCGGGTATGTGTGAAACGGTCTGTTGCAGAACCTAGATATGCTTGGGGTGGTGAGACACATCATAGTGTTGGAAAAATAAGTGAGATTGAGAATGACGGTCTCTTAATAATAGAGATACCAAATAGACCCATACCATGGCAAGCTGATCCATCAGATATGGAGAAGGTGGAAGATTTCAAGGTTGGAGATTGGGTAAGAGTGAAAGCTTCAGTGTCTTCTCCAAAATATGGATGGGAGGATGTTGCAAGGAATAGTATTGGGGTGATTCATAGCTTGGAGGAGGATGGCGATATAGGTGTTGCTTTTTGCTTCAGAAGTAAGCCCTTTTCTTGCTCAGTCACTGATGTGGAGAAGGTTCCTCCATTTGAGGTGGGCCAAGAAATTCATGTGATGTCATCTGTTACTCAACCACGGCTTGGGTGGTCAAATGAATCACCAGCTACTGTTGGAAAAATAGTGAGAATTGACATGGATGGTGCTCTCAATGTGAGGGTCACTGGTAGGCAGAGCATGTGGAAAGTTTCTCCTGGAGATGCTGAACGGCTTCCAGGATTTGAAGTTGGGGATTGGGTACGCTCAAAACCAAGCCTGGGAACCAGACCAAGCTATGACTGGAATAGTGTTGGTAGAGAGAGTTTAGCTGTTGTGCATAGTGTACAGGATTCTGGATACTTGGAGTTGGCTTGCTGTTTTCGCAAAGGGAAGTGGATCACTCACTATACAGATGTTGAAAAGGTTCCTAGCTTCAAAATTGGGCAGTATGTTAGGTTCCGAACTGGTTTGGTTGAACCAAGGTGGGGTTGGAGAGGAGCTCAATCAGAATCTCAAGGGGTTATAACCAGTATTCATGCTGATGGAGAAGTCAGGGTTGCATTTTTTGGTCTGCCAGGACTGTGGAGAGGAGATCCTTCAGACCTCGAGATTGAACAGATATTTGAAGTGGGAGAGTGGGTAAGGTTGAATGATAGTGCAAATAATTGGAAATCAATTGGGCCAGGTAATGTCGGTGTCGTTCAAGGAATAGGGTATGAAGGAGATGAATTTGACAGAAGCATATTTGTTGGATTTTGTGGGGAGCAAGAAAAGTGGGTTGGACCAAGTTCCCATCTTGAAAGATTTGACAAACTCTTTGTTGGACAGAAGGTTAGAGTAAAACAATATGTAAAGCAACCAAGATTTGGATGGTCAGGGCATACCCATGCTAGCATTGGGACTATACAAGCAATCGATGCTGATGGAAAGCTCCGAATATACACTCCAGCAGGATCCAAAACATGGATGTTGGACCCATCGGAAGTGGAGGTGGTAGAAGAGAAGGAGCTCTGTATTGGAGACTGGGTTAGGGTTAAAGCATCAATTTCAACCCCAACCCACCATTGGGGGGAAGTGAGTCATGCAAGCATCGGGGTGGTGCATCGGATGGAAGACGAGGATCTGTGGGTGGGGTTCTGTTTCACGGAGAGGTTATGGCTATGTAAGGCTTGGGAAATGGAACGGGTTAGGCCGTTTAAAATGGGGGACAAGGTCAGGATCAGAGATGGACTCGTGACCCCGCGATGGGGATGGGGAATGGAGACGCATGCCAGCAAGGGACAGGTCGTAGGGGTAGACGCAAACGGAAAACTGAGGATAAAATTCCGGTGGAGGGAAGGGAGGCCGTGGATAGGAGACCCTGCTGATGTTGCCCTTGATGAGGACTGA 4917 0.4814 MKIPCCSVCQTRYNEEERVPLLLQCGHGFCRECLSRMFSASSDATLACPRCRHVSTVGNSVQALRKNYAVLALLHSAAAAAAANGGGGGRSNFDVDYTDDEEDGGGEGEEEDDDDGKRRRNSRESQASSSGVGGCAPVMEIGGGAHQDLKLVRRIGEGRRAGVEMWMAVISGGGEGGRQRCRHNVAVKKVAVAEGMDLDWVQGKLEDLRRASMWCRNVCTFHGTMRVEDSLCLVMDKCYGSVQSEMQRNEGRLTLEQVLRYGADIARGVVELHAAGVVCMNLKPSNLLLDANGHAVVSDYGLATILKKPSCWKARPECDSAKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDGIGISSESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKAKKLPPQYASVVGGGIPRELWKMIGECLQFKPSKRPTFSAMLAIFLRHLQEIPRSPPASPDNGLDKGSVSNVMEPSPVPELEVPQENPNHLHRLVSEGDTAGVRDLLGKAASENGSNYLSSLLEAQNADGQTALHLACRRGSAELVETILEYREANVDVLDKDGDPPLVFALAAGSPECVHSLIKRTANVWSRLRDGVGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAIAKKYTDCALVILENGGCRSMAILNSKNLTPLHLCVATWNVAVVKRWVEVATSDEIAEAIDIPSPIGTALCMAAASKKDHENEGRELVRILLVAGADPSAQDSQNGRTALHTAAMTDDVDLVKVILAAGVDVNIRNVHNSIPLHLALARGAKSCVRLLLAAGADYNLQDDDGDNAFHIAAETAKMIRENLDWLIVMLKNPNADIEVRNHSGKTLRDILEALPREWLSEDLMEALMKRGVHLFPTIFEVGDWVKFKRSVTTPTHGWQGTKPKSVGFVQSVPDRDNLIVSFCSGEVHVLANEVIKVIPLDRGQHVQLKEDVKEPRFGWRGQSRDSIGTVLCVDDDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTLTSAKHGLGSVTPGSIGIVYCVRPDSSLLIELSYLPNPWHCEPEEVEHVAPFRIGDRVCVKRSVAEPRYAWGGETHHSVGKISEIENDGLLIIEIPNRPIPWQADPSDMEKVEDFKVGDWVRVKASVSSPKYGWEDVARNSIGVIHSLEEDGDIGVAFCFRSKPFSCSVTDVEKVPPFEVGQEIHVMSSVTQPRLGWSNESPATVGKIVRIDMDGALNVRVTGRQSMWKVSPGDAERLPGFEVGDWVRSKPSLGTRPSYDWNSVGRESLAVVHSVQDSGYLELACCFRKGKWITHYTDVEKVPSFKIGQYVRFRTGLVEPRWGWRGAQSESQGVITSIHADGEVRVAFFGLPGLWRGDPSDLEIEQIFEVGEWVRLNDSANNWKSIGPGNVGVVQGIGYEGDEFDRSIFVGFCGEQEKWVGPSSHLERFDKLFVGQKVRVKQYVKQPRFGWSGHTHASIGTIQAIDADGKLRIYTPAGSKTWMLDPSEVEVVEEKELCIGDWVRVKASISTPTHHWGEVSHASIGVVHRMEDEDLWVGFCFTERLWLCKAWEMERVRPFKMGDKVRIRDGLVTPRWGWGMETHASKGQVVGVDANGKLRIKFRWREGRPWIGDPADVALDED 1638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2960 1638 CDD RING-HC_ScPSH1_like 5 52 - -
Aed1g2960 1638 Gene3D - 582 655 IPR036770 -
Aed1g2960 1638 SMART ring_2 6 51 IPR001841 -
Aed1g2960 1638 MobiDBLite consensus disorder prediction 83 135 - -
Aed1g2960 1638 Gene3D - 463 581 IPR036770 -
Aed1g2960 1638 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 83 IPR013083 -
Aed1g2960 1638 ProSiteProfiles Ankyrin repeat region circular profile. 773 805 - -
Aed1g2960 1638 MobiDBLite consensus disorder prediction 450 484 - -
Aed1g2960 1638 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Aed1g2960 1638 SUPERFAMILY Protein kinase-like (PK-like) 142 454 IPR011009 -
Aed1g2960 1638 Pfam RING-type zinc-finger 6 49 IPR027370 -
Aed1g2960 1638 Pfam Ankyrin repeats (3 copies) 709 804 IPR002110 GO:0005515
Aed1g2960 1638 Pfam Ankyrin repeats (3 copies) 506 586 IPR002110 GO:0005515
Aed1g2960 1638 Gene3D - 781 875 IPR036770 -
Aed1g2960 1638 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG-LIKE 2 1637 - -
Aed1g2960 1638 ProSiteProfiles Ankyrin repeat region circular profile. 525 547 - -
Aed1g2960 1638 SMART ANK_2a 773 802 IPR002110 GO:0005515
Aed1g2960 1638 SMART ANK_2a 700 735 IPR002110 GO:0005515
Aed1g2960 1638 SMART ANK_2a 627 658 IPR002110 GO:0005515
Aed1g2960 1638 SMART ANK_2a 740 769 IPR002110 GO:0005515
Aed1g2960 1638 SMART ANK_2a 525 555 IPR002110 GO:0005515
Aed1g2960 1638 SMART ANK_2a 559 588 IPR002110 GO:0005515
Aed1g2960 1638 SMART ANK_2a 806 841 IPR002110 GO:0005515
Aed1g2960 1638 SMART ANK_2a 662 693 IPR002110 GO:0005515
Aed1g2960 1638 SMART ANK_2a 594 623 IPR002110 GO:0005515
Aed1g2960 1638 Pfam Protein kinase domain 181 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g2960 1638 ProSiteProfiles Ankyrin repeat profile. 594 626 IPR002110 GO:0005515
Aed1g2960 1638 ProSiteProfiles Ankyrin repeat region circular profile. 740 771 - -
Aed1g2960 1638 SUPERFAMILY Ankyrin repeat 520 848 IPR036770 -
Aed1g2960 1638 Pfam Mind bomb SH3 repeat domain 932 999 IPR040847 -
Aed1g2960 1638 Pfam Mind bomb SH3 repeat domain 1131 1249 IPR040847 -
Aed1g2960 1638 Pfam Mind bomb SH3 repeat domain 1514 1633 IPR040847 -
Aed1g2960 1638 Pfam Mind bomb SH3 repeat domain 1061 1125 IPR040847 -
Aed1g2960 1638 Pfam Mind bomb SH3 repeat domain 1384 1505 IPR040847 -
Aed1g2960 1638 Pfam Mind bomb SH3 repeat domain 1257 1378 IPR040847 -
Aed1g2960 1638 ProSiteProfiles Protein kinase domain profile. 149 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g2960 1638 Pfam Ankyrin repeats (many copies) 597 644 IPR002110 GO:0005515
Aed1g2960 1638 SUPERFAMILY RING/U-box 5 58 - -
Aed1g2960 1638 Gene3D Transferase(Phosphotransferase) domain 1 238 457 - -
Aed1g2960 1638 MobiDBLite consensus disorder prediction 96 111 - -
Aed1g2960 1638 Gene3D - 656 780 IPR036770 -
Aed1g2960 1638 ProSiteProfiles Ankyrin repeat profile. 740 772 IPR002110 GO:0005515
Aed1g2960 1638 PRINTS Ankyrin repeat signature 789 803 IPR002110 GO:0005515
Aed1g2960 1638 PRINTS Ankyrin repeat signature 526 541 IPR002110 GO:0005515
Aed1g2960 1638 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
Aed1g2960 1638 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 2 1637 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Aed1g2960 1638 ProSiteProfiles Ankyrin repeat profile. 773 805 IPR002110 GO:0005515
Aed1g2960 1638 ProSiteProfiles Ankyrin repeat profile. 525 558 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2960 Aed-Chr1 25071937 25086103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2960 128 438 MAP Kinase Kinase Kinase AT4G08500 27.044 1.30e-16 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Aed1g2960 Pkinase 4.7e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2960 K16279 - gmx:100777576 3177.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2960 1 25071937 25086103 Aed1g2960 1 25071937 25086103 ECH