Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2945 ATGGCTACTAAGTTTGCAAGAAGGACTGAGGTTGGTGGAATAACATGCTCTTATTGGAGAGCTGGGAGATGCACTCGAAACCCTTGCAGGTTTCTGCACGCAGAAACACCATCATCACGTACTGCCTGTGGTGGTAATGTCAATTCTGCTCATGGATACAGAAAAAAACCTTATTCTGTCTCTAAATATAATTCCAAGCCAAGGACACTTTTGATTAGAGGAGATGCAACAACAAAAGTTGCTCAGGCCTCAAAGAAGTCATCACTAGGGATATGTAAATACTGGACAAACAATAACTGTGTTCATGGTGAACAATGCACGTATATACATTCATGGTCTCACGGTGATGGGATTTCTTCAATAAAAAAGCTTCATGAACACAAGAAGGTTATCACTGGCATTGTGCTTCCTTCTGGATCTGACAAACTTTATTCTGGTAGCACCGATGGGACAGTTCGGATATGGGACTGCCATACTGGTCAATGTGCTAAAGTCATCAATCTTGGTGCTGAGGTTACCTCTTTGATCAACGAGGGGCCATGGATATTTGTTGGTCTACAAAATGCTATCAAGGCTTGGAATATCGAGACCGTTTCGGAGTTTACTCTTGATGGACCCAAAGGTCCAGTGCGTGCCATGACGGTTGGCAATGATACACTCTTTGCTGGTGGAGAGGATGGTGTTATTTCTGCCTGGAGAGGAAGCTCTGAAGCTAAGTCTCCTTTTGAACTGGTTGCGTCACTCACTGGCCACACTAAAGCAGTGGTTTCCCTGACTGTTGGATGCAAGATGCTGTACTCTGGGTCCATGGACAAAAGCATAAAGGTCTGGGACATGGATACATTACAGTGTACAATGACACTAAATGAGCATACTGATGTAGTCACATCCCTTATTTGCTGGGACCAATATTTGCTGTCAAGTTCATCTGACTGCACAATTAAGGTCTGGGCTTGCATTGAAGTGGGAACTTTGAAAGCGATATATACGCACACGGAAGAAAGTGGTGTTGTTTCACTTTCGGGGATGTCTGATGCAGAAGGCAAACATATATTGTTTGCCTCTTGTAGAGACAATTCAGTTCGCATGTATGAATTGCCATCATTTTCAGAGAGGGGTCGTTTATTTGCTGAGAAAGATGTTGCATCGATGGAGCTAGGTCCTGGTGGCTACTTCTTCACTGGAGATGAGACTGGTTCGTTGATGGTGTGGAAATGGTTGGAAGTACCACCCAAGGTGGAATCCTCTTGA 1251 0.4404 MATKFARRTEVGGITCSYWRAGRCTRNPCRFLHAETPSSRTACGGNVNSAHGYRKKPYSVSKYNSKPRTLLIRGDATTKVAQASKKSSLGICKYWTNNNCVHGEQCTYIHSWSHGDGISSIKKLHEHKKVITGIVLPSGSDKLYSGSTDGTVRIWDCHTGQCAKVINLGAEVTSLINEGPWIFVGLQNAIKAWNIETVSEFTLDGPKGPVRAMTVGNDTLFAGGEDGVISAWRGSSEAKSPFELVASLTGHTKAVVSLTVGCKMLYSGSMDKSIKVWDMDTLQCTMTLNEHTDVVTSLICWDQYLLSSSSDCTIKVWACIEVGTLKAIYTHTEESGVVSLSGMSDAEGKHILFASCRDNSVRMYELPSFSERGRLFAEKDVASMELGPGGYFFTGDETGSLMVWKWLEVPPKVESS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2945 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 124 165 IPR001680 GO:0005515
Aed1g2945 416 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 9 415 - -
Aed1g2945 416 SUPERFAMILY WD40 repeat-like 97 405 IPR036322 GO:0005515
Aed1g2945 416 SMART c3hfinal6 88 112 IPR000571 GO:0046872
Aed1g2945 416 SMART c3hfinal6 6 35 IPR000571 GO:0046872
Aed1g2945 416 Pfam WD domain, G-beta repeat 121 156 IPR001680 GO:0005515
Aed1g2945 416 Pfam WD domain, G-beta repeat 283 317 IPR001680 GO:0005515
Aed1g2945 416 Pfam WD domain, G-beta repeat 243 278 IPR001680 GO:0005515
Aed1g2945 416 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 124 156 - -
Aed1g2945 416 SMART WD40_4 368 405 IPR001680 GO:0005515
Aed1g2945 416 SMART WD40_4 322 365 IPR001680 GO:0005515
Aed1g2945 416 SMART WD40_4 241 278 IPR001680 GO:0005515
Aed1g2945 416 SMART WD40_4 196 233 IPR001680 GO:0005515
Aed1g2945 416 SMART WD40_4 281 318 IPR001680 GO:0005515
Aed1g2945 416 SMART WD40_4 117 156 IPR001680 GO:0005515
Aed1g2945 416 Gene3D - 118 177 IPR015943 GO:0005515
Aed1g2945 416 PRINTS G protein beta WD-40 repeat signature 265 279 IPR020472 -
Aed1g2945 416 PRINTS G protein beta WD-40 repeat signature 143 157 IPR020472 -
Aed1g2945 416 PRINTS G protein beta WD-40 repeat signature 305 319 IPR020472 -
Aed1g2945 416 PANTHER - 9 415 IPR044715 -
Aed1g2945 416 ProSitePatterns Trp-Asp (WD) repeats signature. 265 279 IPR019775 -
Aed1g2945 416 ProSiteProfiles Zinc finger C3H1-type profile. 86 113 IPR000571 GO:0046872
Aed1g2945 416 Gene3D - 12 116 - -
Aed1g2945 416 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 248 281 - -
Aed1g2945 416 Gene3D - 178 413 IPR015943 GO:0005515
Aed1g2945 416 ProSiteProfiles Zinc finger C3H1-type profile. 15 36 IPR000571 GO:0046872
Aed1g2945 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 287 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2945 Aed-Chr1 24890326 24892478 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2945 123 319 Acyl Lipid Metabolism Gene Families AT3G18860 28.251 1.35e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed1g2945 WD40 0.00018 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2945 - - gmx:100787799 696.041