Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2921 ATGGCATCTTCTTCGAACCCACCATGTGCGGCGTGCAAGTTCCTGCGTAGAAAGTGCCAATCCGAGTGCGTTTTCGCGCCCTACTTCCCACCGGACAACCCTCAGAGGTTCGTCAACGTGCACCGAATCTTCGGCGCCAGCAACGTCTCCAAGCTCCTCAATGAGTTGCGTCCTCATCAACGTGAAGACGCGGTTAACTCTCTGGCCTATGAGGCCGAGATGCGCCTCCGCGACCCCATTAACGGGTGCGTTGGAATCATCTCCCTTCTCCACCAGCAACTCCGCCAGCTCCAGATGGACCTCCAAAGCGCCAAGTTCGAGCTCACAAGGATCCAGAACCTGGGCGGCATCATGACCATACCCGGCATCAGATATGGTCACGTTGCTGCTGGGGTTACCATGCCTGTTGTCAGCGCCGTTATGAACGGCGTTGACAGTGGTAATCCCTATTATAACCAACAACAAAGTTATCATCAGTGTGTGCCACAGCAGCTGGTTAGGAACAACTGTGATGAGACTAATCATCATGTGATGGCCATGAACATTGCTAGTTTTGGGCCATTGAGTCAGCTTCAGCAGCCTAGTGTAACTGCTGTTGCTGACCCTCACACTACTAGGGTTCATCCCTCTTAG 633 0.534 MASSSNPPCAACKFLRRKCQSECVFAPYFPPDNPQRFVNVHRIFGASNVSKLLNELRPHQREDAVNSLAYEAEMRLRDPINGCVGIISLLHQQLRQLQMDLQSAKFELTRIQNLGGIMTIPGIRYGHVAAGVTMPVVSAVMNGVDSGNPYYNQQQSYHQCVPQQLVRNNCDETNHHVMAMNIASFGPLSQLQQPSVTAVADPHTTRVHPS 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2921 210 Coils Coil 94 114 - -
Aed1g2921 210 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 4 169 - -
Aed1g2921 210 Pfam Lateral organ boundaries (LOB) domain 8 104 IPR004883 -
Aed1g2921 210 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 169 - -
Aed1g2921 210 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2921 Aed-Chr1 24623735 24624367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2921 2 210 AS2 family AT1G65620 51.675 4.78e-59 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed1g2921 LOB 7.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2921 - - gmx:100801155 319.701