Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2900 ATGCCTCCGAGGAAGAAGAAACCCAATCTACAACATCAACAACAACAACAACAACCTTCCAAGTTCGGCATCCAACACTTCTTCGATCGCGCCTCTCAGAAGCAACACCACCTCCAACCCCACACCAACACCAACACCATCGATGCACCATCAAAAGAACAACCCAACGAGGTGTTGGTGTCGGTGTCGCCACCACCACCAGAAGAACAACCACCCAACGAGGTGTCGCCGCAGACGCGCTTCAAATTCTCGCCCGGAATGTTGGTGAAGCAGAGCCAGAACGAGGCCGTCGACGACGAGGTTACATGGAAGATATCTCCCGTCAACGAGAGGCTCCAGGCGGTTTCCAAACACACGCCGGAAAAGAATTGTCTGGATAAGGTTTTTACTTCGCCGACTCCCAAGGGGACATTGAGCTTCAAAAGGATCAATTCCGCCCGTGATGTGAGTGGACAGAGCCCCTTCAGAACTCCACCGTCTATGTCCTATCGCCCTGACAAGGTGCAGCGTGTCAATGATATTGAACACATTGGACCGTGTGACCATCATTTATTAAGGCAGAACAAAAAGGCATTGCTTGAACTGTTAGATCAAGTTGAAGATGCCATTGCTGTTGATGATGTTACACTTGGTAGTAACAACACTTATTCCTTTAAAGTTCCTCAAGATCTAATTGGTAATGAGTTGAACCCTGCAGTAGAAAGGACTGAATCACATATACCTAAAGAGGTTGTTGATGTCTTCCCCAATTCTAATTATTTGGTTTTGGAGGTATCTGAACTTCGGTCTGCTGATTCATCTGCTGCTCGACACTCATACAAGGTCTTGTCTGATAGTGTAATTGCACCTGGAGATACTGTGCACATAGTCGGTCAGTTTGATGAAGGGGGAAATTGTGATATTGATCACGATAAAAACTTTTTGATTGTACACCCAGATATTCTAGTGTCTGGAACACGGGTTGCTGGCAGTATTAGTTGCCCAAGGAGAACTGTCTTAGATGAGAGGCTAAAAAGCAATGATTACTCAATTGCAGCATTAACTGGAACCCTGCTACACCAAATTTTTCAGGCTGGGCTTACGAAAGACAATCCTACGGTAAATTTCATGGAAGATTATGCAGAAGTGGTATTACAAAGAAACATCGAAAGTTTGTATGCATGTGGAGTAAATGAAAATGATTTCCGCAAAACCTTTAGAGATGCTATCCCTAAAATATTGAGTTGGATCATGCAGTTCAAAAATACGAAGGAAAGAAAAGACCCCAGTGTCAATTTTGGATTTGATGATGGGCCAAAGAATGTAATTGATATTGAGGAGATGGCTTGGGCTCCAAAATATGGTTTGAAAGGGATGATTGATGCTTCAGTCAGAGTGAAAATTCAATCACAAAATGATGAACCGGAGGAAAAGATCATGCCAGTAGAGTTCAAAACTGGAAAAGCAACAAACAGCCAGGCAAGTTCTGTAGAACATAGGGCCCAAGTAATTTTGTACACTCTCCTGATGTCTGAAAGGTATCAGAAGGCTGTTGATTCTGGTCTTCTATATTATCTCCAATCTGACCAGACACAGGGCATTGTGGTTCAAAGATCTGACTTAACTGGGCTTATAATGCGACGAAATGAACTAGCAAGTGATCTTCTTAAGGCATTAACTTTGCAACAACTGCCTCCAATGTTACAGAGTCCTGGCATTTGCAGAAGCTGTCGTCATCTTAATGTGTGTAACATATATCATAAGGCACATGGTGGAAGCACTGAGAGCAGTGGGTTGGGAGAAGTTTTTGATTCTCTTACTAATCACATGACATCTTCACATTCTAAGTTTCTCTGCCATTGGGATCGCTTGATTGACTTAGAAGCTAAAGAGACTGAGCTTTTAAAGAAGGGGGTGTGGCAATCACATAGTTTAAAGAGTCCAAACAGTGGTGGCCTTTCTTCTATTGTTCTTGATGCTTCACAAGGAATACCTCATCAAAAATCTCTCAAAGATAATAAATTCATTTATCATTTCACACAACAAGATTCTTCTAGCCTCTCTGGAGTTTCTGATGCGTTTTCTAGTGCCTCTTTGAAAAATGATTTAGATTTCACACTTCGGAGTGGAGATTATGTGATACTGAGTAATCAATCTAGCCATCAAGTTATTGCTAGAGGGGTGATATCTGAAATTAGTCCGATCCATGTATCTGTTTCCTTTTCTAAGCATTTGCGAATTCCTGGGAGTTCTTCCACTGCACATGATCTCATTCAGCAGGTTTGGAGAATTGACAAGGATGAAGCTGTGACTTCATTTGCACTTATGAGGTTTAATCTTGTACAACCATTTCTACAAAATGATCAAAGTGCTCATCTGCGGAGGATGATTGTTGATCTTGAGGCTCCTAGATTTGACAGTGGATCCTTAGTTAGTCAGGATCCAGCGATATCCTATGTTTGGTCAGAGAAGAGTTTAAATGATGACCAGCGTGGAGCAGTTCTCAAGATACTTTCAGCAAAAGATTATGCACTTATTTTAGGTATGCCTGGAACAGGGAAAACGTCCACATTGGTGCATGCTGTGAAAGCCTTGTTGATTAGAGGGACATCCATTTTGCTAACTTCCTATACAAATTCTGCTGTTGATAATTTACTCATCAAATTAAAAGCACAGGGGATTGATTTTCTACGAATTGGAAAACATGAAGTAGTGAATGAGGAGGTCAGAGAACACTGCCTCTCAGCAACGAATGTACAAGGTGTTGAAGATATCAAACTAAGGTTGGAACAAGTCAAAGTTGTCGCAGTTACTTGTCTCGGCATTTCTAGTCCCTTGCTTGCCAACAGGAGGTTTGATGTATGCATTATGGATGAAGCTGGACAGACAACTCTACCAGTGTCCTTGGGCCCTCTAACATTTGCTTCAATGTTTATACTTGTTGGGGATCATTATCAACTGCCACCCCTTGTCAAGAGTGCAGAGGCCCGAGAGAATGGCATGGGAATAAGTTTGTTCTGTAGGCTCTCAGAAGCACATCCAGAGGCTATTTCAGCTTTGCAGAGTCAGTATCGAATGTGTCAGGACATTATGGACCTTTCAAATGCCTTGATATATGGTGACAGATTGAGGTGTGGTTCATTTGAGGTAGCTAACTCAAAACTTGAGTTTTCAAGCTTAAACTGTGATTTTCCTTGGCTAGAAGATGTTTTGAATCCTCGAAGACCTGTTATATTTATTGACACTGACAAGTTGCCTGCTTTAGAGGCAAGAGATAAGAAGATTGTAAATAACCCTATTGAAGCTCACATAATTGCTGAGGTTGCAAGGGAATTGGTAAAAAATGGAATCGGAGGAGAACACATTGGCATTATTACTCCCTATAATTCACAAGCAAACCTCATCCGGAATGCTTCTTCCACGACTTCCTTGGAGATTCATACCATTGACAAATACCAGGGTAGAGATAAAGACTGTATATTAGTATCTTTTGTAAGGTCTATGGAAAACCCAACAAGCTGTGCTGCTTCCCTGCTTGGAGACTGGCACAGGATAAATGTGGCTCTTACTCGTGCTAAGAAAAAGTTGATCATGGTAGGGTCTCGGAGAACTCTTCTGAAGGTTCCTCTGTTGAAACTTCTCATTAAGAAGGTTGAGGAGCAATCTGGAGTTTTAACTGTGACTAAGAAGGACATCTATTCAAAAAGTGAGCTTAAGAGATGTTCTCAAATGAGATGA 3717 0.4183 MPPRKKKPNLQHQQQQQQPSKFGIQHFFDRASQKQHHLQPHTNTNTIDAPSKEQPNEVLVSVSPPPPEEQPPNEVSPQTRFKFSPGMLVKQSQNEAVDDEVTWKISPVNERLQAVSKHTPEKNCLDKVFTSPTPKGTLSFKRINSARDVSGQSPFRTPPSMSYRPDKVQRVNDIEHIGPCDHHLLRQNKKALLELLDQVEDAIAVDDVTLGSNNTYSFKVPQDLIGNELNPAVERTESHIPKEVVDVFPNSNYLVLEVSELRSADSSAARHSYKVLSDSVIAPGDTVHIVGQFDEGGNCDIDHDKNFLIVHPDILVSGTRVAGSISCPRRTVLDERLKSNDYSIAALTGTLLHQIFQAGLTKDNPTVNFMEDYAEVVLQRNIESLYACGVNENDFRKTFRDAIPKILSWIMQFKNTKERKDPSVNFGFDDGPKNVIDIEEMAWAPKYGLKGMIDASVRVKIQSQNDEPEEKIMPVEFKTGKATNSQASSVEHRAQVILYTLLMSERYQKAVDSGLLYYLQSDQTQGIVVQRSDLTGLIMRRNELASDLLKALTLQQLPPMLQSPGICRSCRHLNVCNIYHKAHGGSTESSGLGEVFDSLTNHMTSSHSKFLCHWDRLIDLEAKETELLKKGVWQSHSLKSPNSGGLSSIVLDASQGIPHQKSLKDNKFIYHFTQQDSSSLSGVSDAFSSASLKNDLDFTLRSGDYVILSNQSSHQVIARGVISEISPIHVSVSFSKHLRIPGSSSTAHDLIQQVWRIDKDEAVTSFALMRFNLVQPFLQNDQSAHLRRMIVDLEAPRFDSGSLVSQDPAISYVWSEKSLNDDQRGAVLKILSAKDYALILGMPGTGKTSTLVHAVKALLIRGTSILLTSYTNSAVDNLLIKLKAQGIDFLRIGKHEVVNEEVREHCLSATNVQGVEDIKLRLEQVKVVAVTCLGISSPLLANRRFDVCIMDEAGQTTLPVSLGPLTFASMFILVGDHYQLPPLVKSAEARENGMGISLFCRLSEAHPEAISALQSQYRMCQDIMDLSNALIYGDRLRCGSFEVANSKLEFSSLNCDFPWLEDVLNPRRPVIFIDTDKLPALEARDKKIVNNPIEAHIIAEVARELVKNGIGGEHIGIITPYNSQANLIRNASSTTSLEIHTIDKYQGRDKDCILVSFVRSMENPTSCAASLLGDWHRINVALTRAKKKLIMVGSRRTLLKVPLLKLLIKKVEEQSGVLTVTKKDIYSKSELKRCSQMR 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2900 1238 Gene3D - 317 577 IPR011604 -
Aed1g2900 1238 Coils Coil 182 202 - -
Aed1g2900 1238 PANTHER DNA REPLICATION ATP-DEPENDENT HELICASE/NUCLEASE DNA2 135 1213 IPR026851 GO:0017108|GO:0017116|GO:0033567
Aed1g2900 1238 Pfam AAA domain 996 1195 IPR041679 -
Aed1g2900 1238 CDD SF1_C_Upf1 1019 1197 IPR041679 -
Aed1g2900 1238 Gene3D - 757 914 IPR027417 -
Aed1g2900 1238 Gene3D - 915 1016 IPR027417 -
Aed1g2900 1238 CDD DEXXQc_DNA2 818 1018 - -
Aed1g2900 1238 PANTHER DNA2/NAM7 HELICASE FAMILY 135 1213 IPR045055 -
Aed1g2900 1238 MobiDBLite consensus disorder prediction 1 77 - -
Aed1g2900 1238 Pfam DNA replication factor Dna2 278 459 IPR014808 -
Aed1g2900 1238 MobiDBLite consensus disorder prediction 8 23 - -
Aed1g2900 1238 Gene3D - 1017 1225 IPR027417 -
Aed1g2900 1238 Pfam Domain of unknown function DUF83 468 577 IPR022765 -
Aed1g2900 1238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 818 1204 IPR027417 -
Aed1g2900 1238 MobiDBLite consensus disorder prediction 37 58 - -
Aed1g2900 1238 Pfam AAA domain 919 986 IPR041677 GO:0004386
Aed1g2900 1238 Pfam AAA domain 819 909 IPR041677 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2900 Aed-Chr1 24392764 24408668 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2900 1 960 Core DNA Replication Machinery Family AT1G08840 52.980 0.0 1008
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2900 K10742 - gmx:100799415 2073.9